Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06866 ATGGTGAGAAGCCCTTGTTGTGACAAAACTGGAATGAGAAAAGGTACGTGGACTCCTGAAGAAGACAACAAGTTAATTGCTTATGTAACTAGATATGGCTCTTGGAATTGGCGACAACTACCTAAATTTGCCGGTCTTGAAAGGTGTGGAAAGAGTTGTAGATTAAGGTGGTTGAACTATCTAAGACCAGATCTCAAAAGAGGGAACTTTACTCAACAAGAAGAAGATACTATCATCAAACTTCATGAAAAACTTGGTAATAGATGGATTGTGATTGCTACAAATTTACCGGGAAGAACAGATAACGAGATAAAGAACCATTGGCACACAAACTTGAAAAAGCGTTTTATAAAAAATAAAAAGTCAGACACTAATAATAGAGCAGGAAACTCCAAAGAAACAAATTCAGACAACAAACATGAAGGAGTGATAGAGAATAGTTGTGGTCCCAATTCTACAAGTCCATCATCTTCAATCTCATCTTCAAGTGGAACAATGGATACTCCAACAACTACGGAAATATTGTATGAAAATTATCTTCTTGATGAGTTTCCTTTAATGGATGCATACATGGATGTTTTGAATGATAATTTCTGGACAGAACCATATATGATAGACAATTCATATGTCCCTCCAAGTGAAGATGCTACATTATTACCTGTCTGGTGTGAACAAGGATACTTCAGCAGTCCTGTGTACGATGAACAACTTTGGGGCTATGGAAAATAA 729 0.3649 MVRSPCCDKTGMRKGTWTPEEDNKLIAYVTRYGSWNWRQLPKFAGLERCGKSCRLRWLNYLRPDLKRGNFTQQEEDTIIKLHEKLGNRWIVIATNLPGRTDNEIKNHWHTNLKKRFIKNKKSDTNNRAGNSKETNSDNKHEGVIENSCGPNSTSPSSSISSSSGTMDTPTTTEILYENYLLDEFPLMDAYMDVLNDNFWTEPYMIDNSYVPPSEDATLLPVWCEQGYFSSPVYDEQLWGYGK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06866 242 CDD SANT 69 112 IPR001005 -
Vivi2g06866 242 MobiDBLite consensus disorder prediction 119 168 - -
Vivi2g06866 242 CDD SANT 16 61 IPR001005 -
Vivi2g06866 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g06866 242 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g06866 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g06866 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Vivi2g06866 242 MobiDBLite consensus disorder prediction 141 168 - -
Vivi2g06866 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 167 - -
Vivi2g06866 242 Gene3D - 68 143 - -
Vivi2g06866 242 Gene3D - 14 66 - -
Vivi2g06866 242 SMART sant 66 114 IPR001005 -
Vivi2g06866 242 SMART sant 13 63 IPR001005 -
Vivi2g06866 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g06866 242 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g06866 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g06866 242 FunFam MYB-related transcription factor 13 66 - -
Vivi2g06866 242 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06866 Vivi-Chr2 208342454 208343559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06866 1 208 MYB Transcription Factor Family AT2G31180 50.000 8.33e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g06866 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06866 K09422 - mtr:11411430 268.085