Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06862 ATGGATGGAAGCTCTTGTGGTGACAAAAATAGATTGCGAAAAGGCAAGTGGACTCATGAAGAAGACAACAAGTTGATTGCTTATGTAACTAGATATGGCTGTTGGAATTGGCGACAAATACCTAAATTTGCAGGTCTTGAAAGATGTGGAAAGAGTTGCAGACTAAGGTGGTTGAACTATCTTAGACCAGATCTCAAAAGAGGAAACTTTTCTCAACAAGAAGAAGAGACTATCATCAAGCTTCATGAAAAACTTGGTAATAGATGGAGAGTGATTGCTGCAAATTTACCAGGGAGAACAGATAACGAGATAAAGAATCATTGGCACACCAACTTAAAAAAGCGTTTTATAAAGAATAATAAGTCTGACACTAAACGTGAAACAGAAAAAACCAAAGCTTCAAATTCAAACAAACACCCTGCAATGGAAGAAGCCAATAAACTTGAAGGAGCATTAGAAAACAATATTTTTCCAAATATTACAAATACATTGTCTTCAACCCCATCTTCAAGTGGATTCTCTTCCATAACAATGGACATTGCAGCAGCCACAATATCATATGAAAGTTCATTTCTTGATGACTATGAGCTTCCTTTATACATGGATGTTTTGAGTGATAGTTTCTGGACAGAACCATATATGATAGACAATTCATATGTTCCTCCAAATGAAGAAGCTAGCTTATTAACTGTGGGATATGAACATGAATACTTTAGTCCTATGTACGATGTTGAACTTTGGAGCAATGGACAATAA 756 0.3571 MDGSSCGDKNRLRKGKWTHEEDNKLIAYVTRYGCWNWRQIPKFAGLERCGKSCRLRWLNYLRPDLKRGNFSQQEEETIIKLHEKLGNRWRVIAANLPGRTDNEIKNHWHTNLKKRFIKNNKSDTKRETEKTKASNSNKHPAMEEANKLEGALENNIFPNITNTLSSTPSSSGFSSITMDIAAATISYESSFLDDYELPLYMDVLSDSFWTEPYMIDNSYVPPNEEASLLTVGYEHEYFSPMYDVELWSNGQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06862 251 MobiDBLite consensus disorder prediction 119 141 - -
Vivi2g06862 251 CDD SANT 69 112 IPR001005 -
Vivi2g06862 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g06862 251 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g06862 251 FunFam MYB-related transcription factor 13 66 - -
Vivi2g06862 251 CDD SANT 16 61 IPR001005 -
Vivi2g06862 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g06862 251 PANTHER MYB DOMAIN PROTEIN 55 4 171 - -
Vivi2g06862 251 SMART sant 13 63 IPR001005 -
Vivi2g06862 251 SMART sant 66 114 IPR001005 -
Vivi2g06862 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g06862 251 Gene3D - 14 66 - -
Vivi2g06862 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g06862 251 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g06862 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g06862 251 Gene3D - 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06862 Vivi-Chr2 208263389 208267123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06862 1 218 MYB Transcription Factor Family AT2G31180 46.364 6.78e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g06862 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06862 K09422 - mtr:11411430 301.212