Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06860 ATGGATGGAAGCTCTTGTGGTGACAAAAATAGAGTGCGAAAAGGCAAGTGGACTCATGAAGAAGACAACAAGTTGATTGCTTATGTAACTAGATATGGCTGTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGTTGAACTATCTAAGACCAGATATCAAAAGAGGAAACTTTTCTCAACAAGAAGAAGACACTATCATAAAGCTTCATGAAAAACTTGGTAATAGATGGAGAGAGATTGCTGCAAATTTACCAGGGAGAACAGATAACGAGATAAAGAATCATTGGCACACCAACTTGAAAAAGCGTTTTATAAAGAATAATAAGTCTGACACTAAACGTGAAACAGAAAAAACCAAAACTTCAAATTCAAATAAACACCCTGCAATGGAAGAAGCCAATAAACTTGAAGGAGCATTAGAAAACAATATTGTTCCAAATATTACGAATACATTGTCTTCAACCCCATCTTCAAGTGGATTCTCTTCCATAACAATGGACACTGCAGCAGCCACAATATCATATGAAAGTTCAATTCTTGATGACTACGAGCTTCCTTTTATGGATGCATACATGGATGTTTTGAGTGATAGTTTCTGGACAGAACCATATATGATAGACAATTCACATGTTCCTCCAAATGGAGAAGCTAGCTTATTAACTGTGGGATATGAACATGAATACTTTAGTCTTATGTACGATGTTGAACTTTGGAGCAATGGACAATAA 765 0.3608 MDGSSCGDKNRVRKGKWTHEEDNKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNYLRPDIKRGNFSQQEEDTIIKLHEKLGNRWREIAANLPGRTDNEIKNHWHTNLKKRFIKNNKSDTKRETEKTKTSNSNKHPAMEEANKLEGALENNIVPNITNTLSSTPSSSGFSSITMDTAAATISYESSILDDYELPFMDAYMDVLSDSFWTEPYMIDNSHVPPNGEASLLTVGYEHEYFSLMYDVELWSNGQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06860 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g06860 254 SMART sant 13 63 IPR001005 -
Vivi2g06860 254 SMART sant 66 114 IPR001005 -
Vivi2g06860 254 CDD SANT 69 112 IPR001005 -
Vivi2g06860 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g06860 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g06860 254 CDD SANT 16 61 IPR001005 -
Vivi2g06860 254 Gene3D - 14 66 - -
Vivi2g06860 254 Gene3D - 69 144 - -
Vivi2g06860 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g06860 254 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g06860 254 MobiDBLite consensus disorder prediction 118 141 - -
Vivi2g06860 254 FunFam MYB-related transcription factor 13 66 - -
Vivi2g06860 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 183 - -
Vivi2g06860 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g06860 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06860 Vivi-Chr2 208240100 208241160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06860 1 222 MYB Transcription Factor Family AT2G31180 47.321 3.35e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g06860 Myb_DNA-binding 8.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06860 K09422 - mtr:11411430 309.301