Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06859 ATGGTGAGAAGCCCTTGTTGTGACAAAACTGGAATGAGAAAAGGTGCGTGGACTCCTGAAGAAGACAACAAGTTAATTGCTTATGTAACTAGATATGGCTCTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGGTGTGGAAAGAGTTGTAGACTAAGGTGGTTGAACTATCTAAGACCAGATCTCAAAAGAGGGAACTTTACACAACAAGAAGAAGATACTATCATCAAGCTTCATGAAAAACTGGGTAATAGATGGATTGTGATTGCTTCAAACTTTCCAGGAAGAACAGATAATGAGATAAAGAATCATTGGCATACCAACTTGAAAAAACGATCGGTGAAGAATAATAAGTCAGACAATAATAATGGAACACGAAACTCCAAAGATACAAATTCAGATAACGTTACAGTTGAAGAAGACAACACACTTGAAGGAGTGCTAGAAAACAATAGTGTTCCTAATATTACCAGTCCATTGTCTTCAATCCCATCTTCAAGTGGAACAATGGATACCCCAACAACTACAGAAATATCTTATGAAAATTATGTTCTTGATGAGCTTCCTTTAATGGATGCATACATGGATGTTTTGAATGATAATTTCTGGACCGAACCATATATGATAGACAATTCATATGTCTCTCCAAGTGAAGAAGTTACATTATTACCTGTCTGGTGTGAACATGATTACTTCAGTCCTGTGTACGATGAACAACTTTGGAGCCATGGGAAATAA 747 0.3681 MVRSPCCDKTGMRKGAWTPEEDNKLIAYVTRYGSWNWRQLPKFAGLERCGKSCRLRWLNYLRPDLKRGNFTQQEEDTIIKLHEKLGNRWIVIASNFPGRTDNEIKNHWHTNLKKRSVKNNKSDNNNGTRNSKDTNSDNVTVEEDNTLEGVLENNSVPNITSPLSSIPSSSGTMDTPTTTEISYENYVLDELPLMDAYMDVLNDNFWTEPYMIDNSYVSPSEEVTLLPVWCEHDYFSPVYDEQLWSHGK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06859 248 Gene3D - 68 144 - -
Vivi2g06859 248 CDD SANT 69 112 IPR001005 -
Vivi2g06859 248 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g06859 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Vivi2g06859 248 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g06859 248 MobiDBLite consensus disorder prediction 153 176 - -
Vivi2g06859 248 MobiDBLite consensus disorder prediction 121 139 - -
Vivi2g06859 248 CDD SANT 16 61 IPR001005 -
Vivi2g06859 248 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g06859 248 Gene3D - 7 66 - -
Vivi2g06859 248 SMART sant 13 63 IPR001005 -
Vivi2g06859 248 SMART sant 66 114 IPR001005 -
Vivi2g06859 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 182 - -
Vivi2g06859 248 FunFam MYB-related transcription factor 13 66 - -
Vivi2g06859 248 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g06859 248 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g06859 248 MobiDBLite consensus disorder prediction 108 139 - -
Vivi2g06859 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06859 Vivi-Chr2 208227331 208232669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06859 1 215 MYB Transcription Factor Family AT2G31180 52.093 6.03e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g06859 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06859 K09422 - mtr:11411430 288.5