Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06847 ATGTTGGCGAAAGCTTGTGAGAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAACTTGATGCCAGCAACGACGCGGATAAGCCCGTTCGAAAAGTTGCGGCGAAGGGATCGAAGAAAGGGTGTATGAAAGGCAAAGGAGGGCCTGAGAATTCGCGGTGTAATTATAGAGGTGTTAGACAAAGGACTTGGGGGAAATGGGTTGCTGAAATCCGCGAGCCGAATCGGGGGAGTAGGTTATGGTTAGGTACTTTTACTACTGCCATTGGTGCTGCTCTTGCTTATGATGAAGCGGCCCGGGCAATGTATGGTTCTTGTGCGCGGTTGAACTTTCCTAATGTTTCAGTTCCGAGGTTCCCTGAGGAATCTTCGAATGACATTCCGGTTGGGAACGAGTCGGGTTCCTCGATGGTAGTAACTGAGAATACTGAGTCGATGATAATACCGAATAACTCAGGGATAGGAATAGATGTTGTTAGTAATGATATGGAACAGGTTTCCTTACCCGTAAGTGTAAAACGGGAGAACGAGTAA 561 0.4706 MLAKACEKGDGSKSLGKILAKWKEYNAQLDASNDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMYGSCARLNFPNVSVPRFPEESSNDIPVGNESGSSMVVTENTESMIIPNNSGIGIDVVSNDMEQVSLPVSVKRENE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06847 186 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Vivi2g06847 186 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vivi2g06847 186 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vivi2g06847 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 154 - -
Vivi2g06847 186 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vivi2g06847 186 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vivi2g06847 186 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vivi2g06847 186 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vivi2g06847 186 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Vivi2g06847 186 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06847 Vivi-Chr2 207863936 207865228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06847 8 125 AP2-EREBP Transcription Factor Family AT2G40350 59.836 1.72e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g06847 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06847 - - tpra:123899058 310.842