Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06836 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCAACATCCATTTCCTTTCAAAACCCTTCACTCTTCACCACAATCACTTCCCCTCCACCACTTCCTCAACCAGAAGCACTTAAAGGCTGTCTTGGAAGCCTAGATGGAGCATGCATCGAAAAGCTCTTACTCCATTGTGCAAGTGCTTTGGAAAGCAACGACATAACCCTAGCTCAACAAGTCATGTGGGTCCTAAACAACGTTGCTTCACCATTAGGTGACACTAACCAAAGACTCACCTCATGGTTTCTAAGAGCTTTAATCTCTAGAGCTTCAAGAATTTGTCCAACTTCAATGAATTTCAAAGGAAGTGACATTATTCAAAGACGGTTGATGTCGGTCACCGAACTCGCCGGGTATGTTGATCTTATTCCTTGGCATAGGTTTGGATTTTGTGCTTCAAACAATGAAATTTTCAAAGCTATTAAGGGATTCAAAAGGGTGCATGTTTTAGATTTTAGCATAACTCCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAGTTACAAGAAGGCCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCAATGGTTCCACCTTTGGTTAATATATCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCAAAGTTTAAGGATGTCCCTTTTGAGTTTAATGTTATTGGAGATAATGTTCCGAATTCGATGGCATCGGAAGAATCGAGGAATATTGAATCAACTAGCTTTAATTTTGAATCAATGTTGAGTCTCTTGAATCCTAGTATGTTGAATCTTAGGGAAGATGAAGCTTTGGTTATAAATTGTCAAAATTGGCTACGTTATTTGTCGGACGATCGAAAGGGTCAAAATATTTCGATTCGAGACGTTTTTATGAATTTAGTTAAAGGACTTAACCCTCAAATTGTGCTATTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATAACTGCTTCTTTTAACCATTTATGGATACCCTTTGATGCTTTGGACACTTTTTTGCCTAAAGATAGTTGTCAAAGGACAGAATTTGAATCTGACATAGGGCAGAAAATTGAGAACATTATAAGCTTTGAAGGGCACCAAAGGATAGAGAGATTGGAGTCAGGGATGCAAATGTCACAAAGAATGAAAAACGTTGGTTACTTTAGTGTTCCATTTTGTGATGAAACTGTTGTTGAAGTTAAGGGTTTGCTTGATGAACATGCTAGTGGATGGGGAATGAAAAGAGAAGAAAACATGTTGGTTCTTACATGGAAAGGAAATAGTTGCGTGTTTGCGACTGCTTGGGTCCCTAGTGAAATTAGGGATCATATCGGTATTTGA 1365 0.3817 MHVHMKAELKATSISFQNPSLFTTITSPPPLPQPEALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPTSMNFKGSDIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFKRVHVLDFSITPCMQWPTFIDSLAKLQEGPPSLRITVPSFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIGDNVPNSMASEESRNIESTSFNFESMLSLLNPSMLNLREDEALVINCQNWLRYLSDDRKGQNISIRDVFMNLVKGLNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNVGYFSVPFCDETVVEVKGLLDEHASGWGMKREENMLVLTWKGNSCVFATAWVPSEIRDHIGI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06836 454 Pfam GRAS domain family 50 443 IPR005202 -
Vivi2g06836 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 433 IPR005202 -
Vivi2g06836 454 ProSiteProfiles GRAS family profile. 40 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06836 Vivi-Chr2 207691834 207693566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06836 23 445 GRAS Transcription Factor Family AT3G49950 44.573 6.89e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi2g06836 GRAS 6.7e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06836 - - gmx:100805056 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06836 2 207691834 207693566 Vivi2g06836 2 207691834 207693566 ECH