Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06834 ATGGACCCAATGTTTCCCGGCGACACCTCCTCCTCCGCCGTAGACCCAATGTTCTCCACCTTCAGCCTCCAATCCCTTCTCACTTTCAACCCTTCCTTCTTCACTGACAACTTCCACACCATAACCGATGAACCTCAACTTCCCAACCTCCCTCAATCTGCCACCGACCATACTCCTTACCTTAACAACAACAAAAATTTCCTCATTGTCCCAAAAACCGAACACCCTCTTAATCTTCCTCAACTAGAAGAACACCTCCCATTTCAACAACAACCCTTCAACTTCCTCCCCCAATACTACCCACCCTTTGATACTTTCCACCGTCTCCCTCAGCTCCATTCCCCCGAACACTCTAGCAGAAAACGCCTCCGCCACCCGGAAACAACTCCACCACCACCACCACAGAAACAACCTCACTTTGTCCGTGGAAAATCTCCTTCCTTGATTCCTCAGAGCAAGTTAGCAAGACAGAGAAGACAAACGCTAAGCGACAAAACACGCTGTTTGCAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACCCTTTTCCAAGAAGCTTACAAATATGTCAAGTTTTTGCAGGCACAGTCATCTGTTCTTCAGTCAATGCCTTCTCATTCAACCACAACCTACAGCGGAGGCGGCGGCGACGGTGTTTTTGGTGAGTTGAAGAAGCTGAACCGAAGCCAGGCGTTGCAAATTGTGGTGAACTCACCGGTTGCACAAACAAAGCTTTGTTCACAGGGCTACTGTGTTTTCTCCATGGAACAAATCTCTGTGCTCAGAAAATCATCAGAGAGAAGACAACAACAGCAGCAGCAGAATATCTCTGATAATGATTCTTCTTCCAAGACTTTCTTTCACTAA 873 0.4696 MDPMFPGDTSSSAVDPMFSTFSLQSLLTFNPSFFTDNFHTITDEPQLPNLPQSATDHTPYLNNNKNFLIVPKTEHPLNLPQLEEHLPFQQQPFNFLPQYYPPFDTFHRLPQLHSPEHSSRKRLRHPETTPPPPPQKQPHFVRGKSPSLIPQSKLARQRRQTLSDKTRCLQKLMPWDKKMDQATLFQEAYKYVKFLQAQSSVLQSMPSHSTTTYSGGGGDGVFGELKKLNRSQALQIVVNSPVAQTKLCSQGYCVFSMEQISVLRKSSERRQQQQQQNISDNDSSSKTFFH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06834 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Vivi2g06834 290 SMART finulus 152 201 IPR011598 GO:0046983
Vivi2g06834 290 MobiDBLite consensus disorder prediction 110 127 - -
Vivi2g06834 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 204 IPR036638 GO:0046983
Vivi2g06834 290 Gene3D - 150 212 IPR036638 GO:0046983
Vivi2g06834 290 MobiDBLite consensus disorder prediction 265 290 - -
Vivi2g06834 290 MobiDBLite consensus disorder prediction 110 146 - -
Vivi2g06834 290 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 142 262 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06834 Vivi-Chr2 207618396 207619268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06834 158 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.455 3.04e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06834 - - vvo:131635828 517.694