Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06811 ATGGACATGGATTCCACTGGTGGTGGTTCCTCTTGTTGGCTCTATGATTATGATGGCTATGATATATCTCTTGCTGCTGCTGATTTCATGGCTTCTTCTCATCACTCTTCTGCTGTTGATTTCATGGCTTCTTCTGATCATCACTCTTCTGCTGCTTTCAACTGGATGCCTCACTCTCAGTCTCAGTCTCAGACTCATATCATCAACCCACCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTAGATTCAACTGTATTCGAAAGTGGCCCTTCAAAGCCTTCAAAGCGCTTGCAAATGGAATACTCATTAGATTCAACTTTACTCGAAAACGGCCCTTCAAAGCGGTTAAGGACAGACTCATATGCTTCTGGCTCGAAGGCGGGTCGTGAGAAAGTGAGAAGGGATAAACTGAATGATAAGTTTCTTGAACTGAGTTCTGTCTTAGAGCCTGATACACTGCCCAAAACAGACAAAGTAACTTTATTAAACGACGCGGTTCGTGTGGTGACTCAATTAAGAAATGAAGCACAGAGGCTCAAGGAAAGGAACGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGTGACGAGAAGAATAAGCTGAAGTTAGACAAAGAAAAGCTGGAGCAACAAGTGAAGTTAACAAGTGTGCAGTCAAGTTTCCTCTCTAATGCCATGGCTGCTAAAGCACAAACTGCTGGCCACAAGCTGATGCCATTCATTGGTTATCCTGGACTTTCGATGTGGCAGTTTATGTCACCTGCTACGATTGATACATCACAGGATCATCTCCTTCGACCACCCGTTGCTTAA 837 0.4349 MDMDSTGGGSSCWLYDYDGYDISLAAADFMASSHHSSAVDFMASSDHHSSAAFNWMPHSQSQSQTHIINPPSSNISLEMEYSLDSTVFESGPSKPSKRLQMEYSLDSTLLENGPSKRLRTDSYASGSKAGREKVRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAQRLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKAQTAGHKLMPFIGYPGLSMWQFMSPATIDTSQDHLLRPPVA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06811 278 Gene3D - 127 207 IPR036638 GO:0046983
Vivi2g06811 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 190 IPR036638 GO:0046983
Vivi2g06811 278 Coils Coil 164 226 - -
Vivi2g06811 278 MobiDBLite consensus disorder prediction 114 134 - -
Vivi2g06811 278 PANTHER BHLH TRANSCRIPTION FACTOR 43 278 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vivi2g06811 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Vivi2g06811 278 SMART finulus 129 180 IPR011598 GO:0046983
Vivi2g06811 278 CDD bHLH_AtILR3_like 128 203 - -
Vivi2g06811 278 Pfam Helix-loop-helix DNA-binding domain 128 174 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06811 Vivi-Chr2 207293853 207295820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06811 111 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.322 9.79e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g06811 HLH 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06811 - - psat:127086780 461.455