Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06794 ATGGTAATATCAGTGATATTTATCATAATAAGGTTGTTTATGGAAGCGCTATGTGAGTTTTGTGAGATTGTTAGAGCTGTGGTTTACTGCAAGCCGGATTCCGCTCGTTTATGTCTGCGTTGCGATGCGATTGTGCACTCCGCGAATGCGCTTGCTCGCAGACATCCGAGAAGTTTATTGTGTGATAAGTGTAATTTTGATTCGGCGATTGTTCGTTGCGTTGATTATAAACTGTCTCTGTGTCAGTTTTGTGATTGGAATTCTACAGATGAGTGTTGTGTGTTGGGGCATAACCATGTGTTGCTTAGTTTCTACACTGGTTGTCCATCTTTGGCAGAGTTGGCTAAGATTTGGCCACATTTTGTTGGCGGGAATGGAAATTCATCGGTTGAGAGTAGTATTGCTGGCTGTCAGCCTTTGGATTGGCCGCATGAAAAGAATGGCGGGTTGTTTGGGTTGGGGAAGGCGAAAAATAAGATGGACGGAGAAGAGGCGTCTGTTAAATATGAACACCCTTGGATTGGGACACCACCTATTGTTTTGTCGAATTCAAACGGCACACAATACTGCAAAGATCAAGCATTTTTGTTTGATCTAGACTCGAACCAACCGAAGATTCAAGGATGCTCTGATGTCAAGGAACTAGTTTTTCACGAGGGGACTAGTCTTTGTGAAGGTTTCAATGTGGATGATGCTCAATTAAACTTTGAAAGTGCTGAGGAAATATTTGGCTGCTCTCAAAGTGCCGCAAAATACAACCATGAAGATGGAGGATTAGAGTGTCTATTAATAGATAAAAATATTCAAGTCACAAAATGTACCAGTCTTACCGAGACTGCAGCGGAGGCTTTATCACCCGTGCAACAAGATTGTCTGGCTTTTCCATTATCAGGGGCTGGCGGATCAACAAGTGTGATGCAGGGCATCAACAATAATGCAAATTGTGCACTTATGACTCCTAGCTGCAACAGTAGCATTACTATGGGATTTCCTCAGAGTCAAATTCATTCAGGAACTTCAATTGAATTACCTAATCTTAATGGTGAAAACAATGTTACTGAACTTCTAAATTGTGGGTTACCTCCAGTGTTTCATCCTGGCGAATCCCCTTGGGAACCAAATTTGGAGGGTACGTGTGCAGAAGCAAGGGAACAAGCCAAAATGAGATACCAGGAGAAAAAGAAAACTCGAACATTTGGTAAGCAAATAAGATATGCCTCTCGCAAAGCAAGGGCTGATACAAGAAAACGCGTGAAAGGCCGATTCGTTAAAGCAGGTGAAGCATATGATTATGATCCTCTTTTGAGCGACTACTAA 1317 0.4222 MVISVIFIIIRLFMEALCEFCEIVRAVVYCKPDSARLCLRCDAIVHSANALARRHPRSLLCDKCNFDSAIVRCVDYKLSLCQFCDWNSTDECCVLGHNHVLLSFYTGCPSLAELAKIWPHFVGGNGNSSVESSIAGCQPLDWPHEKNGGLFGLGKAKNKMDGEEASVKYEHPWIGTPPIVLSNSNGTQYCKDQAFLFDLDSNQPKIQGCSDVKELVFHEGTSLCEGFNVDDAQLNFESAEEIFGCSQSAAKYNHEDGGLECLLIDKNIQVTKCTSLTETAAEALSPVQQDCLAFPLSGAGGSTSVMQGINNNANCALMTPSCNSSITMGFPQSQIHSGTSIELPNLNGENNVTELLNCGLPPVFHPGESPWEPNLEGTCAEAREQAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLLSDY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06794 438 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vivi2g06794 438 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 14 428 - -
Vivi2g06794 438 CDD Bbox1_BBX-like 17 60 - -
Vivi2g06794 438 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vivi2g06794 438 Pfam CCT motif 383 425 IPR010402 GO:0005515
Vivi2g06794 438 ProSiteProfiles CCT domain profile. 383 425 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06794 Vivi-Chr2 207042030 207046626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06794 14 433 C2C2-CO-like Transcription Factor Family AT3G21880 39.623 2.41e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g06794 CCT 3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06794 - - gmx:100804738 513.842