Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06792 ATGGTAATATCAGTGATATTTATCATAATAAGGTTGTTTATGGAAGCGCTATGTGAGTTTTGTGAGATTGTTAGAGCTGTGGTTTACTGCAAGCCGGATTCCGCTCGTTTATGTCTGCGTTGCGATGCGATTGTGCACTCCGCGAATGCGCTTGCTCGCAGACATCCGAGAAGTTTATTGTGTGATAAGTGTAATTTTGATTCGGCGATTGTTCGTTGCGTTGATTATAAACTGTCTCTGTGTCAGTTTTGTGATTGGAATTCTACAGATGAGTGTTGTGTGTTGGGGCATAACCATGTGTTGCTTAGTTTCTACACTGGTTGTCCATCTTTGGCAGAGTTGGCTAAGATTTGGCCACATTTTGTTGGCGGGAATGGAAATTCATCGGTTGAGAGTAGTATTGCTGGCTGTCAGCCTTTGGATTGGCCGCATGAAAAGAATGGCGGGTTGTTTGGGTTGGGGAAGGCGAAAAATAAGATGGACGGAGAAGAGGCGTCTGTTAAATATGAACACCCTTGGATTGGGACACCACCTATTGTTTTGTCGAATTCAAACGGCACACAATACTGCAAAGATCAAGCATTTTTGTTTGATCTAGACTCGAACCAACCGAAGATTCAAGGATGCTCTGATGTCAAGGAACTAGTTTTTCACGAGGGGACTAGTCTTTGTGAAGGTTTCAATGTGGATGATGCTCAATTAAACTTTGAAAGTGCTGAGGAAATATTTGGCTGCTCTCAAAGTGCCGCAAAATACAACCATGAAGATGGAGGATTAGAGTGTCTATTAATAGATAAAAATATTCAAGTCACAAAATGTACCAGTCTTACCGAGACTGCAGCGGAGGCTTTATCACCCGTGCAACAAGATTGTCTGGCTTTTCCATTATCAGGGGCTGGCGGATCAACAAGTGTGATGCAGGGCATCAACAATAATGCAAATTGTGCACTTATGACTCCTAGCTGCAACAGTAGCATTACTATGGGATTTCCTCAGAGTCAAATTCATTCAGGAACTTCAATTGAATTACCTAATCTTAATGGTGAAAACAATGTTACTGAACTTCTAAATTGTGGGTTACCTCCAGTGTTTCATCCTGGCGAATCCCCTTGGGAACCAAATTTGGAGGGTACGTGTGCAGAAGCAAGGGAACAAGCCAAAATGAGATACCAGGAGAAAAAGAAAACTCGAACATTTGGTAAGCAAATAAGATATGCCTCTCGCAAAGCAAGGGCTGATACAAGAAAACGCGTGAAAGGCCGATTCGTTAAAGCAGAAGAGACAGGAGTTAACGGCGATGCATCCTGA 1308 0.4258 MVISVIFIIIRLFMEALCEFCEIVRAVVYCKPDSARLCLRCDAIVHSANALARRHPRSLLCDKCNFDSAIVRCVDYKLSLCQFCDWNSTDECCVLGHNHVLLSFYTGCPSLAELAKIWPHFVGGNGNSSVESSIAGCQPLDWPHEKNGGLFGLGKAKNKMDGEEASVKYEHPWIGTPPIVLSNSNGTQYCKDQAFLFDLDSNQPKIQGCSDVKELVFHEGTSLCEGFNVDDAQLNFESAEEIFGCSQSAAKYNHEDGGLECLLIDKNIQVTKCTSLTETAAEALSPVQQDCLAFPLSGAGGSTSVMQGINNNANCALMTPSCNSSITMGFPQSQIHSGTSIELPNLNGENNVTELLNCGLPPVFHPGESPWEPNLEGTCAEAREQAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAEETGVNGDAS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06792 435 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vivi2g06792 435 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 14 427 - -
Vivi2g06792 435 Pfam CCT motif 383 425 IPR010402 GO:0005515
Vivi2g06792 435 CDD Bbox1_BBX-like 17 60 - -
Vivi2g06792 435 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vivi2g06792 435 ProSiteProfiles CCT domain profile. 383 425 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06792 Vivi-Chr2 207042027 207046626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06792 14 428 C2C2-CO-like Transcription Factor Family AT3G21880 38.663 2.81e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g06792 CCT 3.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06792 - - gmx:100804738 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06792 2 207042027 207046626 Vivi2g06792 2 207042027 207046626 ECH