Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06790 ATGAATACCAACAACAACAACAACAAAAACTATAACATGTCTCCACTCTCTGATCATCAGAACAAACCCATCATCCATGAATTCGATTTTTTCTCTCAGAATAACACCAACCATGCCTCTACTTCTGCTGCACCTCCCCATCATCATTACACCCCTTCTTCTCTTACTGAATTCAAAGTAAATACTAGTTTGAATCTTCTTACCACAAACACAAGCAGTGATCAATCAGTGGTGGAACCTGACATATCAACTAATTCAGAAGACAAAAAAGTTAACCTAGAGCTTGATGTTCTTCAAGCTGAGCTTGAGAGAAAGAAGGCTGAGAATCACCAGCTGAGGAACATGTTTGATGAGGCTAAGATGAATTACGAGGCGTTGCAAATGCATATGTTGAGTTTGATGCAGGAGAGGAAGGTAGAGGATTGTAAAGAAGAGGAACGAGAAGAAGAGAAACCAAATGGGAATGGTGGAGTTTTGATACCAAGACAAGTTACGGATCTAGTGAACAACAATGAGGAAGATTCTAAGGATGAAGTTGTTTTTGATCATGATAACAAGGAATCTGATCATGGAAATGAAAGAAATGATAGTCCTTCAAACCATGTTTTAGCTGCTAATAATAATACTAATAATGTTTCAAATTTTAGTCCTCAAACTAATGTTGAAGAAGCTGAGGCAACAATGAAGAAAGCAAAAGTTTCGGTTCGAGCTCGGTCGGAGGCTAATATGATCAATGATGGGTGTCAATGGAGAAAGTATGGACAGAAGATGGCGAAAGGAAATCCGTTTCCTCGAGCTTATTATCGATGCACCATGGCTTTAAATTGTCCGGTGAAAAAACAAGTACAAAGGTGTGCCGAGGACAAATCAATATTGGTAACAACATACGAAGGAAATCACAACCATGCTTTGCCACCAGCAGCTATGGAAATGGTGCAACAAACATCATCGGCTGCAAGAATGTTACTATCAGGACCAATGACAAGTCCTGATGGACTAATGAATCCAAATTTTCTCACAAGAACAGTGTTTCCTTCTTCTTCAAGCATTGCAACTATTTCGGCATCAGCTCCATTTCCAACCATTACATTGGATTTAACTCAATCACCAAATAATCTATTACAGTTTCCTACTCAAACATTGTTTAACCAGTCACGATTTTCAGGACTTCAAATGTCTCAAGATGCAGAAACTTCTCAATCTCAACAGACATCACAGAACCTTGCAGCTGATCCTGACTTGACTGCAGTTTTGGTAGCTGCTCTTACTTGCATGATCGGGGCTTCACAACCAAACAATAGTAACACAAAAACCAATAACAATAATGGACTTCAAATGTCTCAAGATGCAGAAACTTCTCAATCTCAACAGACATCACAGAACCTTGCAGTTGATCCTGACTTGACTGCAGTTTTGATAGCTGCTCTTACTTGCATGATTGGGGCTTCACAACCAAAGGATAGTAACACAAAAAACAATAACAACAATGACAATGTTATATAA 1503 0.3879 MNTNNNNNKNYNMSPLSDHQNKPIIHEFDFFSQNNTNHASTSAAPPHHHYTPSSLTEFKVNTSLNLLTTNTSSDQSVVEPDISTNSEDKKVNLELDVLQAELERKKAENHQLRNMFDEAKMNYEALQMHMLSLMQERKVEDCKEEEREEEKPNGNGGVLIPRQVTDLVNNNEEDSKDEVVFDHDNKESDHGNERNDSPSNHVLAANNNTNNVSNFSPQTNVEEAEATMKKAKVSVRARSEANMINDGCQWRKYGQKMAKGNPFPRAYYRCTMALNCPVKKQVQRCAEDKSILVTTYEGNHNHALPPAAMEMVQQTSSAARMLLSGPMTSPDGLMNPNFLTRTVFPSSSSIATISASAPFPTITLDLTQSPNNLLQFPTQTLFNQSRFSGLQMSQDAETSQSQQTSQNLAADPDLTAVLVAALTCMIGASQPNNSNTKTNNNNGLQMSQDAETSQSQQTSQNLAVDPDLTAVLIAALTCMIGASQPKDSNTKNNNNNDNVI 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06790 500 MobiDBLite consensus disorder prediction 138 216 - -
Vivi2g06790 500 Pfam WRKY DNA -binding domain 245 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi2g06790 500 Coils Coil 88 122 - -
Vivi2g06790 500 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi2g06790 500 FunFam probable WRKY transcription factor 31 229 306 - -
Vivi2g06790 500 SUPERFAMILY WRKY DNA-binding domain 237 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi2g06790 500 MobiDBLite consensus disorder prediction 197 216 - -
Vivi2g06790 500 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 66 438 IPR044810 GO:0003700
Vivi2g06790 500 Gene3D WRKY domain 229 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi2g06790 500 MobiDBLite consensus disorder prediction 429 460 - -
Vivi2g06790 500 MobiDBLite consensus disorder prediction 169 196 - -
Vivi2g06790 500 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi2g06790 500 MobiDBLite consensus disorder prediction 138 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06790 Vivi-Chr2 206998774 207002327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06790 60 442 WRKY Transcription Factor Family AT1G62300 45.928 8.13e-102 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi2g06790 WRKY 5.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06790 - - psat:127086719 572.007