Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06772 ATGAACGACCTTCTTACTGATTCATTTGTTAGTGAGGCTACTAATGGGCAGCCTTCTAGACATGGGGATATTGAAATGGGAATGCAGGGTCCAGGAAGCAATTCTGATATGGGAATGGATGCTTTTAATAAACAGATCCAAGATGCAGATAAACAAATTGAGAAGCTATCTGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAGGCATCTGCAATGAAAGCTATCAAGAAGAGGATGGAAAAAGATATTGATGAAGTTGGGAAGATTGCATATGGTGTCAAAGCAAAAATCGAAGCTATCAACAGAGAAAATCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACTGGTATTGATAGAGCAAGGATGAATATGACAAATTCCTTGACTAAGAAATTCAGGGATCTCATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGATCTAGGCCAGATGATGAGACGATTGACCACCTGATAGAAACTGGAAACAGCGAGCAAATCTTCCAACAAGCAATTCTTGAAGCCGGCCGAGGACAGGTAGTGAACACGGTAGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATCGAGAAAAAACTTCTTGATTTACATCAGATTTACCTGGACATGGCAGTCTTAGTTGATGCGCAAGGAGAAATTTTAGACAACATTGAAAGCCAGGTGGTAAATGCAACTGATCATGTGAAATCGGGCAACGATTCTCTCCACATTGCAAAGAGTCTGCAAAAGAAGTCAAGAAAATGCATGATGATTGCCATTATATTGATCCTGCTCATTGCCATCTTTATAGTACTCGCTGTTTTTAAACCATGGAAGAAGTAA 921 0.3985 MNDLLTDSFVSEATNGQPSRHGDIEMGMQGPGSNSDMGMDAFNKQIQDADKQIEKLSVLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAYGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNSLTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGSRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVVNATDHVKSGNDSLHIAKSLQKKSRKCMMIAIILILLIAIFIVLAVFKPWKK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06772 306 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Vivi2g06772 306 FunFam Syntaxin 132 202 302 - -
Vivi2g06772 306 CDD SNARE_syntaxin1-like 208 268 - -
Vivi2g06772 306 CDD SynN 39 196 IPR006011 GO:0016020
Vivi2g06772 306 SMART tSNARE_6 204 271 IPR000727 -
Vivi2g06772 306 SMART SynN_4 34 160 IPR006011 GO:0016020
Vivi2g06772 306 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Vivi2g06772 306 PANTHER SYNTAXIN 38 290 IPR045242 -
Vivi2g06772 306 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g06772 306 Pfam SNARE domain 245 297 IPR000727 -
Vivi2g06772 306 Coils Coil 39 76 - -
Vivi2g06772 306 FunFam Syntaxin 132 34 163 - -
Vivi2g06772 306 Gene3D - 202 302 - -
Vivi2g06772 306 MobiDBLite consensus disorder prediction 1 18 - -
Vivi2g06772 306 Gene3D - 34 163 - -
Vivi2g06772 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06772 Vivi-Chr2 206628235 206633163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06772 1 304 SNARE and Associated Proteins AT3G03800 60.855 2.35e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06772 K08486 - gmx:100800991 479.174