Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06766 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAACTGGTGGGAATCAGCTTCAAGAAACATGAGATTTGATCAAAGTGGTGGAACATCACAACAATCTTCTTCTTCTGCCATCACCAACAATAATATTGTTGATTTTGGTTGGCAAAATTCAGATATGGTTGAGATTAAACCAAGATCTTCCTTGGATAATTCTTCTGTGGTTTTTCATGATACTCGGAAACTCGAACAAAATCAAGATTCTTCGAATTCTACTGACCCCAACTTGCATATGATGGGTTTGGGACTTTCTTCTCATTCCATGGAGTGGAATCAACCATCTTTGATAGGTGATGAAAAGGGAACAGAAAACAGTTTCAGGTCAATATTGGAAGAGAATTTGAGTTCAACAAGGAACAATTTCGAGCAAGAAAATGTTATGGGAATGTGTCAACAAGTGAATAGAAATTTTTCTTTGGATCAAAACCAGTTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTCAGATGGATTCTTCAGCTTTATATGGAACTCCATCAATTTTACAAGGCTCATCTATGAATAGTTTTCCATATGCAACAAATAACTATGGGTTATTGAACTCTAATAATGAGTTGAATATGAACATGCCTTGTAATAATTGGTCTAATAATAAAGTTCCTCAGTTTTTGATGAGAACTTCACCTCCAAAACAATCATCAACAAATAACCAGTTGCATTTTACTAATAACACCCCCTTTTGGAATGCTTCTGAGGCTCCTAATTCTAAGGATGTTAGGTCAAGTTTCTTCCCCTCTTTGCAACCTCAATTCTCCACACCAAATTTTGATTCACACTCAAAGAATATAAGTGAAGTGAATACTGTGGTGAAGAAAAGTGGGAGTGAGCCAGCACCCAAAAGGACTCGTAACGAAACTCCATCAACTTTGCCAGCTTTTAAGGTCAGAAAAGAAAAGATGGGAGACAGAATCACTGCACTCCAACAATTGGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATATATCAAATTTCTTCATGAACAGGTCACACTTTTGAGCACTCCATATATGAAAAGTGGAGCTTCATCAGAGATTCAACAGAATTCGGGAAAATCAAAAAAATCCGATGGCACGAAGCAAGATCTAAGAAGTCGAGGTCTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACATTTGGAGGAACATCAAGATAA 1281 0.3708 MADDDQFHHSSGNWWESASRNMRFDQSGGTSQQSSSSAITNNNIVDFGWQNSDMVEIKPRSSLDNSSVVFHDTRKLEQNQDSSNSTDPNLHMMGLGLSSHSMEWNQPSLIGDEKGTENSFRSILEENLSSTRNNFEQENVMGMCQQVNRNFSLDQNQFSPQYSSGDSNVIQMDSSALYGTPSILQGSSMNSFPYATNNYGLLNSNNELNMNMPCNNWSNNKVPQFLMRTSPPKQSSTNNQLHFTNNTPFWNASEAPNSKDVRSSFFPSLQPQFSTPNFDSHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTLLSTPYMKSGASSEIQQNSGKSKKSDGTKQDLRSRGLCLVPISSTFPVTHETTVDFWTPTFGGTSR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06766 426 CDD bHLH_AtbHLH_like 312 363 IPR045239 -
Vivi2g06766 426 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 138 407 - -
Vivi2g06766 426 SMART finulus 317 361 IPR011598 GO:0046983
Vivi2g06766 426 Gene3D - 316 379 IPR036638 GO:0046983
Vivi2g06766 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 368 IPR036638 GO:0046983
Vivi2g06766 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Vivi2g06766 426 FunFam Transcription factor bHLH123 family 316 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06766 Vivi-Chr2 206274549 206278348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06766 241 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 61.616 6.59e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06766 - - gmx:100778697 548.895