Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06733 ATGGCTGATGATGATCAATTTCATCATACAAGTGGAAACTGGTGGGAATCAGCATCAAGAAACATGAGATTTGATCAAAGTGGTGGAACATCACAACAATCTTCTTCTTCTGCCATCACCAACAATAATATTGTTGATTTTGGTTGGCAAAATTCAGATATGGTTGAGATTAAACCAAGATCTTCCTTGGATAATTCTTCTGTGGTTTTTCATGATACTCGGAAACTCGAACAAAATCAAGATTCTTCGAATTCTACTGACCCCAACTTGCATATGATGGGTTTGGGACTTTCTTCTCATTCCATGGAGTGGAATCAGCCATCTTTGATAAGAGGTGATGAAAAGGGAACAGAAAACAGTTTCAGGTCAATATTGGAAGAGAATTTGAGTTCAACAAGGAACAATTTCGAGCAAGAAAATGTGATGGGAATGTGTCAACAAGTGAATAGAAATTTTTCTTTGGATCAAAACCAGTTTAGTCCTCAATATAGTTCTGGAGACAGCAATGTTATTCAAATGGATTCTTCAGCTTTATATGGAACACCATCAATTTTACAAGGCTCATCTATGAGTAGTTTTCCATATGCAACAAATAACTATGGATTATTGAACTCGAATAATGAGTTGAATATGAACATGCCTTGTAATAATTGGTCTAACAATAAAGTTCCTCAGTTTTTGATGAGAACTTCACCTCCAAAACAATCATCAACAAATAACCAGTTGCATTTTACTAATAACACCCCTTTTTGGAATGCTTCTGAGGCTCCTAATTCTATTAAGGATGTTAGGTCAAGTTTCTTCCCCTCTTTGCAACCTCAATTCTCCACACCAAATTTTGATTCACACTCAAAGAATATAAGTGAAGTGAATACTGTGGTGAAGAAAAGTGGGAGTGAGCCAGCACCCAAAAGGACTCGTAACGAAACTCCATCAACTTTGCCAGCTTTTAAGGTCAGAAAAGAAAAGATGGGAGACAGAATCACTGCACTCCAACAATTGGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTTCTTCATGAACAGCTTTTGAGCACTCCATATATGAAAAGTGGAGCTTCATCAGAGATTCAACAGAATTCGGGTAAAACAAAAAAATCCGATGGCGCGAAGCAAGATCTAAGAAGTCGAGGTCTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACATTTGGAGGAACATCAAGATAA 1281 0.3731 MADDDQFHHTSGNWWESASRNMRFDQSGGTSQQSSSSAITNNNIVDFGWQNSDMVEIKPRSSLDNSSVVFHDTRKLEQNQDSSNSTDPNLHMMGLGLSSHSMEWNQPSLIRGDEKGTENSFRSILEENLSSTRNNFEQENVMGMCQQVNRNFSLDQNQFSPQYSSGDSNVIQMDSSALYGTPSILQGSSMSSFPYATNNYGLLNSNNELNMNMPCNNWSNNKVPQFLMRTSPPKQSSTNNQLHFTNNTPFWNASEAPNSIKDVRSSFFPSLQPQFSTPNFDSHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQLLSTPYMKSGASSEIQQNSGKTKKSDGAKQDLRSRGLCLVPISSTFPVTHETTVDFWTPTFGGTSR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06733 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Vivi2g06733 426 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 147 407 - -
Vivi2g06733 426 Gene3D - 318 364 IPR036638 GO:0046983
Vivi2g06733 426 FunFam Transcription factor bHLH123 family 318 378 - -
Vivi2g06733 426 SMART finulus 319 363 IPR011598 GO:0046983
Vivi2g06733 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 366 IPR036638 GO:0046983
Vivi2g06733 426 CDD bHLH_AtbHLH_like 314 361 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06733 Vivi-Chr2 205465337 205469246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06733 242 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 61.616 5.49e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06733 - - gmx:100778697 536.184