Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06731 ATGGCTGATGATGATCAATTTCATCATACAAGTGGAAACTGGTGGGAATCAGCATCAAGAAACATGAGATTTGATCAAAGTGGTGGAACATCACAACAATCTTCTTCTTCTGCCATCACCAACAATAATATTGTTGATTTTGGTTGGCAAAATTCAGATATGGTTGAGATTAAACCAAGATCTTCCTTGGATAATTCTTCTGTGGTTTTTCATGATACTCGGAAACTCGAACAAAATCAAGATTCTTCGAATTCTACTGACCCCAACTTGCATATGATGGGTTTGGGACTTTCTTCTCATTCCATGGAGTGGAATCAGCCATCTTTGATTTTCAGGTCAATATTGGAAGAGAATTTGAGTTCAACAAGGAACAATTTCGAGCAAGAAAATGTGATGGGAATGTGTCAACAAGTGAATAGAAATTTTTCTTTGGATCAAAACCAGTTTAGTCCTCAATATAGTTCTGGAGACAGCAATGTTATTCAAATGGATTCTTCAGCTTTATATGGAACACCATCAATTTTACAAGGCTCATCTATGAGTAGTTTTCCATATGCAACAAATAACTATGGATTATTGAACTCGAATAATGAGTTGAATATGAACATGCCTTGTAATAATTGGTCTAACAATAAAGTTCCTCAGTTTTTGATGAGAACTTCACCTCCAAAACAATCATCAACAAATAACCAGTTGCATTTTACTAATAACACCCCTTTTTGGAATGCTTCTGAGGCTCCTAATTCTATTAAGGATGTTAGGTCAAGTTTCTTCCCCTCTTTGCAACCTCAATTCTCCACACCAAATTTTGATTCACACTCAAAGAATATAAGTGAAGTGAATACTGTGGTGAAGAAAAGTGGGAGTGAGCCAGCACCCAAAAGGACTCGTAACGAAACTCCATCAACTTTGCCAGCTTTTAAGGTCAGAAAAGAAAAGATGGGAGACAGAATCACTGCACTCCAACAATTGGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTTCTTCATGAACAGGTTACACTTTTGAGCACTCCATATATGAAAAGTGGAGCTTCATCAGAGATTCAACAGAATTCGGGTAAAACAAAAAAATCCGATGGCGCGAAGCAAGATCTAAGAAGTCGAGGTCTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACATTTGGAGGAACATCAAGATAA 1257 0.3723 MADDDQFHHTSGNWWESASRNMRFDQSGGTSQQSSSSAITNNNIVDFGWQNSDMVEIKPRSSLDNSSVVFHDTRKLEQNQDSSNSTDPNLHMMGLGLSSHSMEWNQPSLIFRSILEENLSSTRNNFEQENVMGMCQQVNRNFSLDQNQFSPQYSSGDSNVIQMDSSALYGTPSILQGSSMSSFPYATNNYGLLNSNNELNMNMPCNNWSNNKVPQFLMRTSPPKQSSTNNQLHFTNNTPFWNASEAPNSIKDVRSSFFPSLQPQFSTPNFDSHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTLLSTPYMKSGASSEIQQNSGKTKKSDGAKQDLRSRGLCLVPISSTFPVTHETTVDFWTPTFGGTSR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06731 418 CDD bHLH_AtbHLH_like 304 355 IPR045239 -
Vivi2g06731 418 SMART finulus 309 353 IPR011598 GO:0046983
Vivi2g06731 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 133 399 - -
Vivi2g06731 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 298 347 IPR011598 GO:0046983
Vivi2g06731 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 360 IPR036638 GO:0046983
Vivi2g06731 418 Gene3D - 308 371 IPR036638 GO:0046983
Vivi2g06731 418 FunFam Transcription factor bHLH123 family 308 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06731 Vivi-Chr2 205465335 205469249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06731 232 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 62.121 1.73e-69 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06731 - - gmx:100778697 522.702