Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06726 ATGAGACAAGCAGGTGCATATTCAAGTTTACTAAGTGGAGGAATATCAGGAAGAACAGGTCCACATTCATTACCATTAGCAAGAATAAAGAAGATAATGAAAAACTCTAGCGAAGACGTGAAGATGATATCAGGTGTAGCTCCAATTGTTTTCTCTAAGGCTTGTGAGCTTTTCATTGAAGAAATTACTAGGAGGTCTTGGATTATGGCGATTGATGGTAAAAGAAGAACTTTGAATAAAGAAGATGTTGCTTCTGCTGTTATTGCTACTGATGTTTTCGATTTTTTGATCACTTTGGTTTCTGATTCTGAGAGTGGTTTAGTTGGTTGTGATGATGAAAATGATGACACTGTCATGCAAATGGAAACTATTTGA 375 0.36 MRQAGAYSSLLSGGISGRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEEITRRSWIMAIDGKRRTLNKEDVASAVIATDVFDFLITLVSDSESGLVGCDDENDDTVMQMETI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06726 124 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 105 - -
Vivi2g06726 124 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Vivi2g06726 124 FunFam Nuclear transcription factor Y subunit C 11 102 - -
Vivi2g06726 124 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Vivi2g06726 124 Gene3D Histone, subunit A 14 101 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06726 Vivi-Chr2 205367175 205367549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06726 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.651 1.34e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi2g06726 CBFD_NFYB_HMF 6.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06726 - - gmx:100777614 192.2