Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06701 ATGGCCCCCAACCAACACCATTCACGTTTTAGTTCTAACATGCAGATGCAGCACTACTACTACAACCACACCGACGATGATGATAGCGAAGATATCGACAACGAGATTGTAATCGACAGCGATACAGATGAAGATGAGTACGACTACGACGAGGATGAGGATGAGGAGGAAGAACAAGAAGGTGAAATCAAAACCAACAAGAACAACAACAATGTTGTTTTCGGTGGTAAATCATTTTCATTGACCCGGGTACTACTTGACCCGAGAGGAAAATGGGTTGAAGAATGGAACCGAATATTTCTCTTGGTGTGCGCGATGGGTTTATTCGTGGACCCACTATTTTTCTACACCCTATCAATAAGTGACACGTGTATGTGTCTGTTTGTAGACGGTTGGTTACTCGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATCTCTGGAACATTTGGTTACAGTTCTATATTCAGAAACGCTCCTCTTTTGGCTTCATTCATAACACTCATCACCATCATCATAAGTCTTCACATGCTCTTCGTTACTTCAGAGCTAGCAAGGGTTTTTTCTTTGACATTTTTGTCCTTCTCCCTCTTCCTCAGATTGTGCTATGGGTGACTATTCCATCTTTGTTAAAGGAAGGATCAATTACGAAGGTGATGAGTGTATTGTTGATCATGTTTGTGTTTCAATACCTTCCTAAAATTTATCACTCAGTATGCTTTGTGCGTCGCAACCTCTCTGGTTACATTTTTGGAACTGTTTGGTGGGGATTTGCTCTCAACATGATCGCTTATTTTGTTGCTTCCCATGCAGTAGGGGCGTGTTGGTATTTGTTGGGACTTCAAAGGGCATCAAAGTGTCTGGAAGAGCAATGTGTTACAACAATGGGTTGTGGATTGAGAACATTGTGTTGCAAAGAACCTATATATTATGGAAGCAGTAGCATGTTGAAGAAATTAGAGAGAACGAGGTTGATATGGGCACAGAACAGAGAAGCAAGGTCTACATGTTTAGCTAGTGCTGATAACTATGACTATGGAGTTTATGAATGGAGTGTTCAACTTGTGACAAATAATAGCCGTTTGGAAAAGGTACTCCTCCCAATCTTTTGGGGCCTAATGACTCTAAGCACTTTTGGGAACCTCCAGAGCACAACGGAAAGGCTGGAAGTCGTTTTCATTATTATTGTATTGACTAGTGGCCTCCTTCTTGTCACCATGCTAATTGGAAACATCAAGGTGTTTTTACATGCTACAACATCAAAGAAGCAAGCAATGAAATTGAAGATGACGAACATCGAATGGTGGATGAGCAAAAGACGTCTGCCACACGGGCTCAGGCAGCGTGTGCGCAACTATGAGAGACAGTGTTGGGCCGCGATGCGCGGAGTTGATGAATGTCAGTTGATCAAAATTCTACCTGAGGGTTTGAGAAGAGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGGTGCCACTATTTCAGCATATGGATGACTTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACACTAACAAGAGAGGGAGAGCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGTCAAGTCCTAAGAGATGGAATAAAAAGTTGTTGCATGTTAGGGCCAGGAAATTTTACTGGAGACGAGCTTCTATCTTGGTGCTTAAGAAGACCTTTTGTACAACGACTTCCAATATCATCATCAACTTTGGTTACACTTGAAACATGTGAAGTATTTGGGCTTGAAGCCGAGGATGTCAAATATGTGACACAACATTTTAGGTACACATTTGCAAAGGAAAATGTTAGGAGAAGTGTAAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAGTTGGCTTGGAGAAGGTATAGACATAGATTGACTTTGAGTTCTTTGTCCTTTATAAGACCTCGGAGACCTCTGTCAAGGTCCACTTCTTTGGAAGAGGACAGGCTTCGCCTTTATACGGCTTTGTTAACCTCTCCAAAGCCCAATCAAGATGATTTTTCATAG 2082 0.4222 MAPNQHHSRFSSNMQMQHYYYNHTDDDDSEDIDNEIVIDSDTDEDEYDYDEDEDEEEEQEGEIKTNKNNNNVVFGGKSFSLTRVLLDPRGKWVEEWNRIFLLVCAMGLFVDPLFFYTLSISDTCMCLFVDGWLLVTVTVIRCMTDALHLWNIWLQFYIQKRSSFGFIHNTHHHHHKSSHALRYFRASKGFFFDIFVLLPLPQIVLWVTIPSLLKEGSITKVMSVLLIMFVFQYLPKIYHSVCFVRRNLSGYIFGTVWWGFALNMIAYFVASHAVGACWYLLGLQRASKCLEEQCVTTMGCGLRTLCCKEPIYYGSSSMLKKLERTRLIWAQNREARSTCLASADNYDYGVYEWSVQLVTNNSRLEKVLLPIFWGLMTLSTFGNLQSTTERLEVVFIIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMTNIEWWMSKRRLPHGLRQRVRNYERQCWAAMRGVDECQLIKILPEGLRRDIKYHLCLGLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETLTREGEPVQRMLFVVRGHLQSSQVLRDGIKSCCMLGPGNFTGDELLSWCLRRPFVQRLPISSSTLVTLETCEVFGLEAEDVKYVTQHFRYTFAKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06701 693 SUPERFAMILY cAMP-binding domain-like 423 611 IPR018490 -
Vivi2g06701 693 MobiDBLite consensus disorder prediction 26 60 - -
Vivi2g06701 693 Gene3D Jelly Rolls 495 613 IPR014710 -
Vivi2g06701 693 Gene3D Helix hairpin bin 422 488 - -
Vivi2g06701 693 SUPERFAMILY Voltage-gated potassium channels 87 417 - -
Vivi2g06701 693 Coils Coil 49 69 - -
Vivi2g06701 693 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 659 - -
Vivi2g06701 693 MobiDBLite consensus disorder prediction 20 69 - -
Vivi2g06701 693 ProSiteProfiles cAMP/cGMP binding motif profile. 497 576 IPR000595 -
Vivi2g06701 693 CDD CAP_ED 497 603 IPR000595 -
Vivi2g06701 693 Pfam Ion transport protein 96 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g06701 693 Pfam Cyclic nucleotide-binding domain 517 605 IPR000595 -
Vivi2g06701 693 FunFam cyclic nucleotide-gated ion channel 4 495 613 - -
Vivi2g06701 693 FunFam Cyclic nucleotide-gated ion channel 1 424 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06701 Vivi-Chr2 204851562 204855048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06701 61 692 Ion Channels AT5G54250 73.438 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06701 K05391 - vvo:131648017 1347.03