Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06700 ATGGCCCCCAACCAACACCATTCACGTTTTAGTTCTAACATGCAGATGCAGCACTACTACTACAACCACACCGACGATGATGATAGCGAAGATATCGACAACGAGATTGTAATCGACAGCGATACAGATGAAGATGAGTACGACTACGACGAGGATGAGGATGAGGAGGAAGAACAAGAAGGTGAAATCAAAACCAACAAGAACAACAACAATGTTGTTTTCGGTGGTAAATCATTTTCATTGACCCGGGTACTACTTGACCCGAGAGGAAAATGGGTTGAAGAATGGAACCGAATATTTCTCTTGGTGTGCGCGATGGGTTTATTCGTGGACCCACTATTTTTCTACACCCTATCAATAAGTGACACGTGTATGTGTCTGTTTGTAGACGGTTGGTTACTCGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATCTCTGGAACATTTGGTTACAGTTCTATATTCAGAAACGCTCCTCTTTTGGCTTCATTCATAACACTCATCACCATCATCATAAGTCTTCACATGCTCTTCGTTACTTCAGAGCTAGCAAGGGTTTTTTCTTTGACATTTTTGTCCTTCTCCCTCTTCCTCAGATTGTGCTATGGGTGACTATTCCATCTTTGTTAAAGGAAGGATCAATTACGAAGGTGATGAGTGTATTGTTGATCATGTTTGTGTTTCAATACCTTCCTAAAATTTATCACTCAGTATGCTTTGTGCGTCGCAACCTCTCTGGTTACATTTTTGGAACTGTTTGGTGGGGATTTGCTCTCAACATGATCGCTTATTTTGTTGCTTCCCATGCAGTAGGGGCGTGTTGGTATTTGTTGGGACTTCAAAGGGCATCAAAGTGTCTGGAAGAGCAATGTGTTACAACAATGGGTTGTGGATTGAGAACATTGTGTTGCAAAGAACCTATATATTATGGAAGCAGTAGCATGTTGAAGAAATTAGAGAGAACGAGGTTGATATGGGCACAGAACAGAGAAGCAAGGTCTACATGTTTAGCTAGTGCTGATAACTATGACTATGGAGTTTATGAATGGAGTGTTCAACTTGTGACAAATAATAGCCGTTTGGAAAAGGTACTCCTCCCAATCTTTTGGGGCCTAATGACTCTAAGCACTTTTGGGAACCTCCAGAGCACAACGGAAAGGCTGGAAGTCGTTTTCATTATTATTGTATTGACTAGTGGCCTCCTTCTTGTCACCATGCTAATTGGAAACATCAAGGTGTTTTTACATGCTACAACATCAAAGAAGCAAGCAATGAAATTGAAGATGACGAACATCGAATGGTGGATGAGCAAAAGACGTCTGCCACACGGGCTCAGGCAGCGTGTGCGCAACTATGAGAGACAGTGTTGGGCCGCGATGCGCGGAGTTGATGAATGTCAGTTGATCAAAATTCTACCTGAGGGTTTGAGAAGAGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGCATATGGATGACTTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACACTAACAAGAGAGGGAGAGCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGTCAAGTCCTAAGAGATGGAATAAAAAGTTGTTGCATGTTAGGGCCAGGAAATTTTACTGGAGACGAGCTTCTATCTTGGTGCTTAAGAAGACCTTTTGTACAACGACTTCCAATATCATCATCAACTTTGGTTACACTTGAAACATGTGAAGTATTTGGGCTTGAAGCCGAGGATGTCAAATATGTGACACAACATTTTAGGTACACATTTGCAAAGGAAAATGTTAGGAGAAGTGTAAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAGTTGGCTTGGAGAAGGTATAGACATAGATTGACTTTGAGTTCTTTGTCCTTTATAAGACCTCGGAGACCTCTGTCAAGGTCCACTTCTTTGGAAGAGGACAGGCTTCGCCTTTATACGGCTTTGTTAACCTCTCCAAAGCCCAATCAAGATGATTTTTCATAG 2067 0.4219 MAPNQHHSRFSSNMQMQHYYYNHTDDDDSEDIDNEIVIDSDTDEDEYDYDEDEDEEEEQEGEIKTNKNNNNVVFGGKSFSLTRVLLDPRGKWVEEWNRIFLLVCAMGLFVDPLFFYTLSISDTCMCLFVDGWLLVTVTVIRCMTDALHLWNIWLQFYIQKRSSFGFIHNTHHHHHKSSHALRYFRASKGFFFDIFVLLPLPQIVLWVTIPSLLKEGSITKVMSVLLIMFVFQYLPKIYHSVCFVRRNLSGYIFGTVWWGFALNMIAYFVASHAVGACWYLLGLQRASKCLEEQCVTTMGCGLRTLCCKEPIYYGSSSMLKKLERTRLIWAQNREARSTCLASADNYDYGVYEWSVQLVTNNSRLEKVLLPIFWGLMTLSTFGNLQSTTERLEVVFIIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMTNIEWWMSKRRLPHGLRQRVRNYERQCWAAMRGVDECQLIKILPEGLRRDIKYHLCLGLVRQHMDDLVLENICDRVKSLVFTKGETLTREGEPVQRMLFVVRGHLQSSQVLRDGIKSCCMLGPGNFTGDELLSWCLRRPFVQRLPISSSTLVTLETCEVFGLEAEDVKYVTQHFRYTFAKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06700 688 MobiDBLite consensus disorder prediction 26 60 - -
Vivi2g06700 688 Pfam Ion transport protein 96 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g06700 688 FunFam cyclic nucleotide-gated ion channel 4 491 608 - -
Vivi2g06700 688 Coils Coil 49 69 - -
Vivi2g06700 688 SUPERFAMILY cAMP-binding domain-like 423 606 IPR018490 -
Vivi2g06700 688 SUPERFAMILY Voltage-gated potassium channels 87 417 - -
Vivi2g06700 688 ProSiteProfiles cAMP/cGMP binding motif profile. 492 571 IPR000595 -
Vivi2g06700 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 654 - -
Vivi2g06700 688 MobiDBLite consensus disorder prediction 20 69 - -
Vivi2g06700 688 CDD CAP_ED 494 598 IPR000595 -
Vivi2g06700 688 Gene3D Jelly Rolls 494 608 IPR014710 -
Vivi2g06700 688 Gene3D Helix hairpin bin 422 488 - -
Vivi2g06700 688 FunFam Cyclic nucleotide-gated ion channel 1 424 488 - -
Vivi2g06700 688 Pfam Cyclic nucleotide-binding domain 512 600 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06700 Vivi-Chr2 204851560 204855050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06700 61 687 Ion Channels AT5G54250 72.656 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06700 K05391 - vvo:131648017 1330.85