Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06684 ATGTATCTGGCTGAATCTGAATGGTTCTATCCAGATCTCATAGCTCCAAGATGGGCCAGTGTAAATCTTGGCATCTTTATATGCATGCAATGTTCGGGAATACATAGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCGTTCATTCATTCAATGGGAAACGATAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTACGACAGAGTTGGCATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGGTTCCGAGGGATGGGAACCCAAGAACACCTTCTGGACTACGGGAAGATAAATCTCCTTCACAATGGCCGAGGCCTGTAGAAAAAAGTGGACATGAATACGTCACTGTTCCTGAAAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAGTTCCTGCTACAAGACGTAGGGTTCCTGCTCCTCGCAAAGTAGCTGAGCAGGTAACTCCTGCTCCTCAACCTCAGGACACCGAGAAAGTGAAACCAGTACCCCCGCAACAACAAGCTGTAACTTCAAAGCCGACTATAGACACAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGATGCAAATGAAAATGGCTCCAAAGGAGCAGGTGCTACTGCTGATGATAATAACTGGGCAGGCTTTCAGTCTGCTGCAGAGGTGTCAACGGCCGAGAAAACTGGTCCACCAAACGCAGTTGAGAGTACTTCTCAGTCTGCACCTGGAATTGAGGATCTATTTAATGTTTCATTTTCTGTGACACCAAGTTTAGCTCCTGCAAAACCACAGAAAGATGTGAAAAATGATATAATGAGCCTCTTTGAAAAGAGCAACATTGTATCTCCATTTGCAATGCATCAACAACAGCTTGCCATGCTAGCACAGCAGCAGTCTCTTCTAATGGCTGCTGCATCTAAATCTAATGGCGTCGATCTCAAGTATCCTACTGGCATACAACAACCAAGTTCCAATGTTTCTGTCCAAAATTGGCCACATACTGGATTTCCAATATCTGGGGTAATGCCCATGGCTTCTCAGGGAGAGCTGCAGAAACTTGTGCAGACTAGGAACATGACTCCAGCACATCCAGCTGGGAACTCTGTTCAACATCCACCATCTGGTTTCTATGCTATGGGGCAAGTTGGCCAGGTTAATGGTATGATGACAATGGGAGTGAGTAAACCTCAGTCAAGTCCAGTTCCGTCAACCTCTTCGAAGTCTACCAAGGAATATGATTTTTCCTCCTTAACACAAGGGATGTTTGCGAAACAATGA 1356 0.4425 MYLAESEWFYPDLIAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPRTPSGLREDKSPSQWPRPVEKSGHEYVTVPENTFEERKKIQPSNAVPATRRRVPAPRKVAEQVTPAPQPQDTEKVKPVPPQQQAVTSKPTIDTAQSTPPKVDYATDLFNMLSMDDANENGSKGAGATADDNNWAGFQSAAEVSTAEKTGPPNAVESTSQSAPGIEDLFNVSFSVTPSLAPAKPQKDVKNDIMSLFEKSNIVSPFAMHQQQLAMLAQQQSLLMAAASKSNGVDLKYPTGIQQPSSNVSVQNWPHTGFPISGVMPMASQGELQKLVQTRNMTPAHPAGNSVQHPPSGFYAMGQVGQVNGMMTMGVSKPQSSPVPSTSSKSTKEYDFSSLTQGMFAKQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06684 451 PRINTS HIV Rev interacting protein signature 5 24 IPR001164 GO:0005096
Vivi2g06684 451 PRINTS HIV Rev interacting protein signature 24 41 IPR001164 GO:0005096
Vivi2g06684 451 PRINTS HIV Rev interacting protein signature 45 66 IPR001164 GO:0005096
Vivi2g06684 451 Gene3D Arf GTPase activating protein 13 106 IPR038508 -
Vivi2g06684 451 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 15 451 IPR044520 GO:0005096
Vivi2g06684 451 MobiDBLite consensus disorder prediction 418 451 - -
Vivi2g06684 451 MobiDBLite consensus disorder prediction 171 205 - -
Vivi2g06684 451 FunFam stromal membrane-associated protein 1 isoform X1 12 105 - -
Vivi2g06684 451 Pfam Putative GTPase activating protein for Arf 15 100 IPR001164 GO:0005096
Vivi2g06684 451 SMART arf_gap_3 7 107 IPR001164 GO:0005096
Vivi2g06684 451 SUPERFAMILY ArfGap/RecO-like zinc finger 15 101 IPR037278 -
Vivi2g06684 451 CDD ArfGap 16 94 - -
Vivi2g06684 451 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 107 IPR001164 GO:0005096
Vivi2g06684 451 MobiDBLite consensus disorder prediction 100 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06684 Vivi-Chr2 204482891 204487219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06684 16 100 C2H2 Transcription Factor Family AT4G05330 49.462 1.00e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06684 K12486 - gmx:100780452 598.586