Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06683 ATGAACGGAAAGGCCAACGTTACCAAAGAGCTTAACGCTAAGCACAAGAAGATACTGGAAGGACTGCTCAAATTACCTGAGAATCGGGAATGTGCTGACTGCAAATCTAAAGCTCCAAGATGGGCCAGTGTAAATCTTGGCATCTTTATATGCATGCAATGTTCGGGAATACATAGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCGTTCATTCATTCAATGGGAAACGATAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTACGACAGAGTTGGCATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGGTTCCGAGGGATGGGAACCCAAGAACACCTTCTGGACTACGGGAAGATAAATCTCCTTCACAATGGCCGAGGCCTGTAGAAAAAAGTGGACATGAATACGTCACTGTTCCTGAAAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAGTTCCTGCTACAAGACGTAGGGTTCCTGCTCCTCGCAAAGTAGCTGAGCAGGTAACTCCTGCTCCTCAACCTCAGGACACCGAGAAAGTGAAACCAGTACCCCCGCAACAACAAGCTGTAACTTCAAAGCCGACTATAGACACAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGATGCAAATGAAAATGGCTCCAAAGGAGCAGGTGCTACTGCTGATGATAATAACTGGGCAGGCTTTCAGTCTGCTGCAGAGGTGTCAACGGCCGAGAAAACTGGTCCACCAAACGCAGTTGAGAGTACTTCTCAGTCTGCACCTGGAATTGAGGATCTATTTAATGTTTCATTTTCTGTGACACCAAGTTTAGCTCCTGCAAAACCACAGAAAGATGTGAAAAATGATATAATGAGCCTCTTTGAAAAGAGCAACATTGTATCTCCATTTGCAATGCATCAACAACAGCTTGCCATGCTAGCACAGCAGCAGTCTCTTCTAATGGCTGCTGCATCTAAATCTAATGGCGTCGATCTCAAGTATCCTACTGGCATACAACAACCAAGTTCCAATGTTTCTGTCCAAAATTGGCCACATACTGGATTTCCAATATCTGGGGTAATGCCCATGGCTTCTCAGGGAGAGCTGCAGAAACTTGTGCAGACTAGGAACATGACTCCAGCACATCCAGCTGGGAACTCTGTTCAACATCCACCATCTGGTTTCTATGCTATGGGGCAAGTTGGCCAGGTTAATGGTATGATGACAATGGGAGTGAGTAAACCTCAGTCAAGTCCAGTTCCGTCAACCTCTTCGAAGTCTACCAAGGAATATGATTTTTCCTCCTTAACACAAGGGATGTTTGCGAAACAATGA 1425 0.4435 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPRTPSGLREDKSPSQWPRPVEKSGHEYVTVPENTFEERKKIQPSNAVPATRRRVPAPRKVAEQVTPAPQPQDTEKVKPVPPQQQAVTSKPTIDTAQSTPPKVDYATDLFNMLSMDDANENGSKGAGATADDNNWAGFQSAAEVSTAEKTGPPNAVESTSQSAPGIEDLFNVSFSVTPSLAPAKPQKDVKNDIMSLFEKSNIVSPFAMHQQQLAMLAQQQSLLMAAASKSNGVDLKYPTGIQQPSSNVSVQNWPHTGFPISGVMPMASQGELQKLVQTRNMTPAHPAGNSVQHPPSGFYAMGQVGQVNGMMTMGVSKPQSSPVPSTSSKSTKEYDFSSLTQGMFAKQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06683 474 CDD ArfGap 19 117 - -
Vivi2g06683 474 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vivi2g06683 474 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Vivi2g06683 474 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vivi2g06683 474 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vivi2g06683 474 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vivi2g06683 474 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 474 IPR044520 GO:0005096
Vivi2g06683 474 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Vivi2g06683 474 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vivi2g06683 474 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vivi2g06683 474 MobiDBLite consensus disorder prediction 123 228 - -
Vivi2g06683 474 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vivi2g06683 474 MobiDBLite consensus disorder prediction 441 474 - -
Vivi2g06683 474 MobiDBLite consensus disorder prediction 194 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06683 Vivi-Chr2 204481552 204487219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06683 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 4.64e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06683 K12486 - gmx:100789910 666.381