Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06681 ATGAACGGAAAGGCCAACGTTACCAAAGAGCTTAACGCTAAGCACAAGAAGATACTGGAAGGACTGCTCAAATTACCTGAGAATCGGGAATGTGCTGACTGCAAATCTAAAGCTCCAAGATGGGCCAGTGTAAATCTTGGCATCTTTATATGCATGCAATGTTCGGGAATACATAGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCGTTCATTCATTCAATGGGAAACGATAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTACGACAGAGTTGGCATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGGTTCCGAGGGATGGGAACCCAAGAACACCTTCTGGACTACGGGAAGATAAATCTCCTTCACAATGGCCGAGGCCTGTAGAAAAAAGTGGACATGAATACGTCACTGTTCCTGAAAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAGTTCCTGCTACAAGACGTAGGGTTCCTGCTCCTCGCAAAGTAGCTGAGCAGGACACCGAGAAAGTGAAACCAGTACCCCCGCAACAACAAGCTGTAACTTCAAAGCCGACTATAGACACAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGATGCAAATGAAAATGGCTCCAAAGGAGCAGGTGCTACTGCTGATGATAATAACTGGGCAGGCTTTCAGTCTGCTGCAGAGGTGTCAACGGCCGAGAAAACTGGTCCACCAAACGCAGTTGAGAGTACTTCTCAGTCTGCACCTGGAATTGAGGATCTATTTAATGTTTCATTTTCTGTGACACCAAGTTTAGCTCCTGCAAAACCACAGAAAGATGTGAAAAATGATATAATGAGCCTCTTTGAAAAGAGCAACATTGTATCTCCATTTGCAATGCATCAACAACAGCTTGCCATGCTAGCACAGCAGCAGTCTCTTCTAATGGCTGCTGCATCTAAATCTAATGGCGTCGATCTCAAGTATCCTACTGGCATACAACAACCAAGTTCCAATGTTTCTGTCCAAAATTGGCCACATACTGGATTTCCAATATCTGGGGTAATGCCCATGGCTTCTCAGGGAGAGCTGCAGAAACTTGTGCAGACTAGGAACATGACTCCAGCACATCCAGCTGGGAACTCTGTTCAACATCCACCATCTGGTTTCTATGCTATGGGGCAAGTTGGCCAGGTTAATGGTATGATGACAATGGGAGTGAGTAAACCTCAGTCAAGTCCAGTTCCGTCAACCTCTTCGAAGTCTACCAAGGAATATGATTTTTCCTCCTTAACACAAGGGATGTTTGCGAAACAATGA 1401 0.4418 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPRTPSGLREDKSPSQWPRPVEKSGHEYVTVPENTFEERKKIQPSNAVPATRRRVPAPRKVAEQDTEKVKPVPPQQQAVTSKPTIDTAQSTPPKVDYATDLFNMLSMDDANENGSKGAGATADDNNWAGFQSAAEVSTAEKTGPPNAVESTSQSAPGIEDLFNVSFSVTPSLAPAKPQKDVKNDIMSLFEKSNIVSPFAMHQQQLAMLAQQQSLLMAAASKSNGVDLKYPTGIQQPSSNVSVQNWPHTGFPISGVMPMASQGELQKLVQTRNMTPAHPAGNSVQHPPSGFYAMGQVGQVNGMMTMGVSKPQSSPVPSTSSKSTKEYDFSSLTQGMFAKQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06681 466 CDD ArfGap 19 117 - -
Vivi2g06681 466 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vivi2g06681 466 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vivi2g06681 466 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vivi2g06681 466 MobiDBLite consensus disorder prediction 123 220 - -
Vivi2g06681 466 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vivi2g06681 466 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 466 IPR044520 GO:0005096
Vivi2g06681 466 MobiDBLite consensus disorder prediction 197 220 - -
Vivi2g06681 466 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Vivi2g06681 466 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vivi2g06681 466 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vivi2g06681 466 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vivi2g06681 466 MobiDBLite consensus disorder prediction 433 466 - -
Vivi2g06681 466 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06681 Vivi-Chr2 204481546 204487219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06681 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 4.54e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06681 K12486 - gmx:100789910 649.818