Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06672 ATGGTGGTTCTTCAACAAGAATACCACAAGATCCTTGTCAAACACCAGAGCCTTGTGAACCTTACAACATATGCACAAATAGTGGTTGTCTCAAGTGATGAAAGTGGAACCAGAAATAAGCACATCATCATAGGTGTTGTGGTTGCTGTCATATTAACTTTGGTTGTAATTCTGCTCTTTGTCGTGGTTCGATACTACAAGAAAAAGAAAAATTTAGCTCGAGAGAATTCAGATGAAGACGATTTCTTGGAGAATTTAACCGGTATGCCAATCCGTTTCCGCTATAAAGATCTTGAAGTTGCAACTGATAACTTCTCTTTGAAGCTTGGTCAAGGAGGTTTTGGATCAGTTTACAAAGGAGTTCTACCTGATGGAACTTATTTAGCTGTGAAGAAGCTAGAAGGTATTGGTCAAGGGAAAAAAGAGTTCAGAGCTGAAGTTAGCATCATTGGTAGCATTCATCACCTTAATTTGGTAAGGCTTAAAGGATTTTGTGCAGATGGAACTCATAGACTTCTAGTTTATGAGTATATGGCTAATAACTCATTGGATAAATGGATATTCAAGAAGAAGAAAAGCGAATTTATTTTGGATTGGGATACAAGGTTTAATATAGCATTAGGAACAGCAAAAGGACTTGCTTATCTGCATCAAGAGTGTGACTCAAAGATTGTTCATTGTGACATTAAGCCTCAAAATGTACTTTTGGATGATCAATTCACTGCAAAAGTTTCAGATTTTGGTTTAGCTAAGCTAATAAATAGAGAACAAAGCCATGTTTTCACAACGCTGAGAGGAACACGTGGCTACCTCGCACCTGAGTGGATAAAAAACTATGCTATATCAGAGAAAAGTGATGTATACAGTTATGGGATGGTGTTGCTAGAGATAATTGGTGGAAGGAAGAACTATGATCCTAACGAGACTTTAGAGAAATCCTATTTTCCTCTGTATGCTTTTAAGATGATGGATGAAGGGAATCTAAAGGATATCATTGATTCAGAGTTGAAAATGGATGAGGAGTGTGATGATAGGGTTCATTGTGCTATAAGTGTTGCATTGTGGTGCATACAAGAAGACATGTCTATGAGACCTTCCATGACAAAAGTTGTGCAAATGTTAGAGGGTGTTTGCAATGTTCCTAAGCCACCAAAATCCTCCAATGAAGGAGACACATCTTCTGATGCTTATCTATCAGGAATTAGTCTATCAGGTCCAAGATAA 1224 0.3758 MVVLQQEYHKILVKHQSLVNLTTYAQIVVVSSDESGTRNKHIIIGVVVAVILTLVVILLFVVVRYYKKKKNLARENSDEDDFLENLTGMPIRFRYKDLEVATDNFSLKLGQGGFGSVYKGVLPDGTYLAVKKLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKSEFILDWDTRFNIALGTAKGLAYLHQECDSKIVHCDIKPQNVLLDDQFTAKVSDFGLAKLINREQSHVFTTLRGTRGYLAPEWIKNYAISEKSDVYSYGMVLLEIIGGRKNYDPNETLEKSYFPLYAFKMMDEGNLKDIIDSELKMDEECDDRVHCAISVALWCIQEDMSMRPSMTKVVQMLEGVCNVPKPPKSSNEGDTSSDAYLSGISLSGPR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06672 407 SMART serkin_6 103 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06672 407 MobiDBLite consensus disorder prediction 385 407 - -
Vivi2g06672 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vivi2g06672 407 Gene3D Phosphorylase Kinase; domain 1 65 177 - -
Vivi2g06672 407 CDD STKc_IRAK 109 376 - -
Vivi2g06672 407 ProSiteProfiles Protein kinase domain profile. 103 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06672 407 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 17 386 - -
Vivi2g06672 407 FunFam S-receptor-like kinase 5 178 383 - -
Vivi2g06672 407 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Vivi2g06672 407 Gene3D Transferase(Phosphotransferase) domain 1 178 395 - -
Vivi2g06672 407 MobiDBLite consensus disorder prediction 381 407 - -
Vivi2g06672 407 Pfam Protein kinase domain 108 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06672 407 SUPERFAMILY Protein kinase-like (PK-like) 86 375 IPR011009 -
Vivi2g06672 407 FunFam serine/threonine-protein kinase PBS1-like 71 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06672 Vivi-Chr2 204234753 204236590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06672 41 386 Receptor kinase-like Gene Family AT5G20050 46.594 2.28e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi2g06672 Pkinase 2.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06672 - - vvo:131648005 739.569