Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06664 ATGGGAGTTCAAGAAAATGACACTCTTTCACAATTGAGTTTACCACCTGGTTTTCGATTTTACCCAACCGATGAAGAGCTTCTTGTTCAATATCTATGTCGCAAAGTAGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTCGACCCATGGGTTCTTCCAAGTAAAGCCATTTTTGGTGAGAAAGAGTGGTATTTCTTTAGCCCAAGAGATAGAAAGTACCCAAACGGAACTAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACTGGAACTGATAAGATTATCACAAACGAAGGTAGAAAAGTTGGTATCAAAAAAGCACTTGTTTTCTATATTGGAAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGTCTTCTTGATTCTTCTCGAAACAACGGCGGCACCAAGTTAGATGATTGGGTTCTGTGTCGAATATACAAGAAAAACTCAAGCGCACAAAAAGCGAATCCAAACGGCGTCGTTTCGAGCAAGGAATACACGCAATACAGCAACGGTTCATCTTCATCTTCTTCCTCTCACATAGACGAAGTTCTGGAATCACTTCCACAAATCGACGACCGTTGTTTCATGTTGCCACGTGTCAATTCACTGAGAACGATGCAACATCGTCAACAAGAAGAAGAGAAGCTGAATCTTCAAAGTAATTTCATGGATTGGTCTAATCCGTCGTCGATTCTGAATACTGGGACGGAGTTTCAAGAAGCGCAGACTCAAGGAATGGTGAGTTTTGGTGGTTGTAATGACGTTTATGTCCCTTCTGTTTCCATGGTGCCGGAGAAGAAACCGACGGAGGAAGAGGTTCAGAGTGGGGCGAGAGCGAACCGGGTTGGGGATTCCGGTTTATTTCAGCGCGGTGGTTCGAATTCAAATGATTTCGCTCAAGGAATGGGGTATTCTAATTCGGTCGACCCGTTTGGTTTTAGATACCCGGTTCAACCGGTTGGGTATGGGTTCGGTCAATGA 1026 0.4308 MGVQENDTLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKANPNGVVSSKEYTQYSNGSSSSSSSHIDEVLESLPQIDDRCFMLPRVNSLRTMQHRQQEEEKLNLQSNFMDWSNPSSILNTGTEFQEAQTQGMVSFGGCNDVYVPSVSMVPEKKPTEEEVQSGARANRVGDSGLFQRGGSNSNDFAQGMGYSNSVDPFGFRYPVQPVGYGFGQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06664 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 226 - -
Vivi2g06664 341 MobiDBLite consensus disorder prediction 167 194 - -
Vivi2g06664 341 FunFam NAC domain-containing protein 72-like 23 167 - -
Vivi2g06664 341 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vivi2g06664 341 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vivi2g06664 341 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Vivi2g06664 341 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Vivi2g06664 341 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06664 Vivi-Chr2 203996991 203998847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06664 1 328 NAC Transcription Factor Family AT1G52890 59.104 5.39e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g06664 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06664 - - tpra:123895211 579.326