Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06660 ATGCAGTTTGAAGATGTTGTGTACAAAATCAACGACAAAAACGGTGGATTGTTCCAGAAGAATGTGAAAGTAGAAGAGAAAACAATACTAAAAGGAGTAAACGGAATTGTTGAACCAGGTGAGATGCTAGCAATGTTAGGTCCATCAGGAAGTGGAAAAACAACACTGTTAACAGCGTTAGGAGGAAGACTTGGTGGAAAGCTTCAAGGAAAAATAACATACAATGATCAACCTTTTTCAAATGTCATAAAAAGAAACACAGGTTTTGTTACACAAGATGATGTTCTTTACCCTCACTTAACAGTGACAGAAACCCTAGTTTTCACAGCACTTCTTAGATTACCAAATACTCTCACAAAACAAGCCAAAGTTGCACTGGCGAAGAACGTTATTGATCAACTTGGATTAACGAAGTGCGAAGATAGCATCGTTGGAGATACTCATCTAAGAGGAGTTTCTGGGGGTGAGAGGAAAAGGGTTAGTATTGGACAGGAATTGCTTATAAACCCTAGTTTGTTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACTACAGCGCAGAGAATTGTGTCGACGTTGTCGGATTTAGCGAAAGGCGGAAGGACTATTGTGATGACAATACATCAACCTTCGAGTAGATTGTACTATATGTTTCATAAAGTTCTGTTGCTTGCTGAAGGGAATGTTTTGTATTTTGGAAAAGGCTCTGAAGCTATTCAACATTTTTCTAATATTGGTTATGCTCCTGCTATGGCTATGAACCCTTCAGATTTCCTCTTGGATCTTGCAAATGGTAAAAAAATAATTAAAATTTCCTATGCATTCTTACCAAATTTAACATGTTATTTAATATTTCGGATCATCAATTTTGCAGGTATCTACACCGATGACGCCAAGCATGACCATGTTATAGACAAGCAAAAACTGATTTCAGCATTTAAGAGTAACTCTGATGGACAATTGAAGCTAGAACATCATGAAATCAATGAGTCTGATGGTAAATTTGAAGAGAAAGGTTCTGGAAAATGGCCTACTAGCTGGTCACAACAATTCTTTGTATTGTTAAGAAGAGATATTAAAGAGAGAAAGTATGAATCATTTTCTGGCCTTAGGATTGGTCAAGTTCTTGTGGTTGCAATTATTTCAGGACTACTTTGGTATAAATCTGATACGTCGCACATGCAGGATCAGATTGGACTATTATTCTTCATAACAGGCTTTTGGGGATTCTTCCCACTCTTCCAAGCAATCTTCACCTTCCCTCAAGAACTAATGATGCTAGAAAAAGAAAGATCCTCAGGAATGTACAGACTCTCCTCCTACTTCGTCTCAAGAATGGTAGCTGACCTACCAATGGAGCTAGTCCTCCCCACAATCTTCCTTCTCATAACATATTTCATGGCAGGACTCAAAGCGACAGCGATAAACTTCTTCGAAACACTTTTCACCCTCTTACTGAGTGTGTTGGTTGCACAAGGACTAGGACTTGCACTTGGAGCTGTTGTACTTGATCAAAAATCAGCAACAACACTTGCATCAGTGATGATGCTGGTTTTCTTACTTGCTGGTGGATTCTATGTTCAGAATGTTCCAAAGTTCATTGCTTGGGTGAAGTATATTTCTATTAGCTACTATACATATCAGCTGTTTATTGGATCACAGTTTCATATTGGAGAAACATACCCTTGTTCTGAAGGTCAGTGTCCTATTGAAGAGTTTCCTCCTATAAAACAAGTGGGGCTTGATTTGAAGACACAATGGATAGCTGCAATGGCTCTAGTAATAATGCTAATTGGTTATAGGCTTATAGCTTATTTGGCTCTTATGAGAATTGGAATCACAAAGAAATTGGCTTAG 1860 0.3812 MQFEDVVYKINDKNGGLFQKNVKVEEKTILKGVNGIVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLQGKITYNDQPFSNVIKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNTLTKQAKVALAKNVIDQLGLTKCEDSIVGDTHLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLSDLAKGGRTIVMTIHQPSSRLYYMFHKVLLLAEGNVLYFGKGSEAIQHFSNIGYAPAMAMNPSDFLLDLANGKKIIKISYAFLPNLTCYLIFRIINFAGIYTDDAKHDHVIDKQKLISAFKSNSDGQLKLEHHEINESDGKFEEKGSGKWPTSWSQQFFVLLRRDIKERKYESFSGLRIGQVLVVAIISGLLWYKSDTSHMQDQIGLLFFITGFWGFFPLFQAIFTFPQELMMLEKERSSGMYRLSSYFVSRMVADLPMELVLPTIFLLITYFMAGLKATAINFFETLFTLLLSVLVAQGLGLALGAVVLDQKSATTLASVMMLVFLLAGGFYVQNVPKFIAWVKYISISYYTYQLFIGSQFHIGETYPCSEGQCPIEEFPPIKQVGLDLKTQWIAAMALVIMLIGYRLIAYLALMRIGITKKLA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06660 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 252 IPR003439 GO:0005524
Vivi2g06660 619 Gene3D - 19 247 IPR027417 -
Vivi2g06660 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 246 IPR027417 -
Vivi2g06660 619 CDD ABCG_EPDR 27 234 - -
Vivi2g06660 619 SMART AAA_5 39 237 IPR003593 GO:0016887
Vivi2g06660 619 Pfam ABC transporter 30 180 IPR003439 GO:0005524
Vivi2g06660 619 Pfam ABC-2 type transporter 350 556 IPR013525 GO:0016020|GO:0140359
Vivi2g06660 619 ProSitePatterns ABC transporters family signature. 152 166 IPR017871 GO:0005524|GO:0016887
Vivi2g06660 619 FunFam ABC transporter G family member 22 17 246 - -
Vivi2g06660 619 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06660 Vivi-Chr2 203952993 203954961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06660 37 268 Calmodulin-binding Proteins AT2G36910 28.333 1.76e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06660 K05681 - gmx:100816135 856.284