Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06650 ATGGGAGTTCAAGAAAATGACACCCTTTCACGATTGAGTTTACCACCTGGTTTTCGATTTTACCCAACCGATGAAGAACTTCTTGTTCAATATCTATGTCGCAAAGTTGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTTGACCCATGGGTTCTTCCAAGTAAAGCCATTTTTGGTGAGAAAGAGTGGTATTTCTTTAGCCCAAGAGATAGAAAGTACCCAAACGGAACTAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACTGGAACTGATAAGATTATCACAAACGAAGGTAGAAAAGTTGGTATCAAAAAAGCACTTGTTTTCTATATTGGAAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGTCTTCTTGATTCTTCTCGAAACAACGGTGGCACCAAGTTAGATGACTGGGTTCTGTGTCGAATATACAAGAAAAACTCAAGCGCACAAAAAGCGAATCCAAACGGCGTCGTTTCGAGCAGAGAATATACACAATACAGCAACGGTTCTTCATCATCTTCTTCCTCTCACATCGATGAAGTTCTGGAATCACTTCCACAAATCGACGACCGTTGTTTCATGCTGCCACGTGTCAATTCACTGAGAACGATGCAACACCGTCAACAAGAAGAAGAGAAGCTGAATCTTCAAAGTAATTTCATGGATTGGTCTAACCCATCGTCGATTATGAATACTGTGACGGAGTTTCAAGAAGTGCAGACTCAAGGAATGGTGAATTTTGGTGGTTGTAATGACATTTATGTCCCTTCTGTTTCCATGGTGCCGGAGAAAAAGCCGACGGAGGAAGAGGTTCAGAGTGGGCCGAGAGCAAACCGGGTTGGGGATTCTGGTTTATTTCAGCGCGGTGGTTCGAATTCGAATGATTTCGCTCAAGGAATGGGGTATTCTAATTCGGTTGACCCGTTTGGTTTTAGATACCCGGTTCAACCGGTTGGGTATGGGTTCGGGCAATGA 1026 0.425 MGVQENDTLSRLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKANPNGVVSSREYTQYSNGSSSSSSSHIDEVLESLPQIDDRCFMLPRVNSLRTMQHRQQEEEKLNLQSNFMDWSNPSSIMNTVTEFQEVQTQGMVNFGGCNDIYVPSVSMVPEKKPTEEEVQSGPRANRVGDSGLFQRGGSNSNDFAQGMGYSNSVDPFGFRYPVQPVGYGFGQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06650 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Vivi2g06650 341 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Vivi2g06650 341 MobiDBLite consensus disorder prediction 167 194 - -
Vivi2g06650 341 FunFam NAC domain-containing protein 72-like 23 167 - -
Vivi2g06650 341 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vivi2g06650 341 MobiDBLite consensus disorder prediction 283 316 - -
Vivi2g06650 341 MobiDBLite consensus disorder prediction 302 316 - -
Vivi2g06650 341 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Vivi2g06650 341 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06650 Vivi-Chr2 203687080 203688912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06650 1 328 NAC Transcription Factor Family AT1G52890 59.701 4.43e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g06650 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06650 - - tpra:123895211 577.4