Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06626 ATGGCGGCAGAGTACGATCTAACACCGCGTATGGCACCAAATCTCGACCGTCATCTAGTCTTTCCTCTCTTAGAGTTTCTTCAGGAGAGACAAATCTACAACGATAACCATATCCTAAAAGCCAAGATCGATCTCTTAAACAACACAAACATGGTTGATTACGCCATGGACATTCACAAGACACTCTACCAAACTGAAGATGTGCCTCAGGATATGGTTGAACGTAGAGCCGACGTTGTCGCTCGATTGAAGTCTCTTGAAGACGCTGCTGCTCCTCTTGTTGCTTTTCTTCAAAATGCGGCTGCTGTTCAGGAATTGAAAGCTGATAAACATTATAATCTTCAGATGCTTAATGATAAATATCAGATCGGTGCTGCACAAATAGAGGCATTATACCAATATGGCAAGTTTCAATTTGAATGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCATTGTGCACTAACAGTGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCAGCTGAAGTATTGATGCAAAACTGGGATGTTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATAATTGACTCAAAGAATTTTTCATCACCTATAAATCAGGTACAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGGACACTGATAATTGATCTGTTTAACCAAGACAAGTATCTTAATGCAATCCAAACTAGTGCTCCGCACCTTTTGCGATACTTGGCCACAGCATTTATTGTCAACAAGCGCAGGAGGCCTCAACTCAAAGAGTTTATAAAAGTTATTCAACAAGAGCAGAATTCGTATAAGGACCCCATCACCGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGCGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGACCCCTTCCTTGGTAAACGAGTTGAAGACAGCAACTTCTCAACTGTACCATTAAGGGACGAGTTCCTTGAAAATGCCAGGCTTTTTATTTTCGAGACATACTGCAGAATACACCAACGCATTGACATGGGAGTACTTGCCGAGAAGCTAAATTTGAATTATGAAGAGGCTGAGAGATGGATTGTGAATCTCATACGAGGCTTAAAGCTTGATGCCAAAATTGACTCTCAAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAGTTGGTTGACCATACCAAGGCCCTCAACGGTCGTACTTACAAGCTGGTCACTCAACTTCTGGAACACGCACAAGGTCAAGCAGCTCGTTGA 1317 0.4176 MAAEYDLTPRMAPNLDRHLVFPLLEFLQERQIYNDNHILKAKIDLLNNTNMVDYAMDIHKTLYQTEDVPQDMVERRADVVARLKSLEDAAAPLVAFLQNAAAVQELKADKHYNLQMLNDKYQIGAAQIEALYQYGKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDVALEELNRLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQLKEFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEDSNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRGLKLDAKIDSQTGTVIMEPNHPNVYEQLVDHTKALNGRTYKLVTQLLEHAQGQAAR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06626 438 CDD eIF3E 4 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vivi2g06626 438 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 417 IPR000717 -
Vivi2g06626 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vivi2g06626 438 Pfam PCI domain 286 400 IPR000717 -
Vivi2g06626 438 SUPERFAMILY "Winged helix" DNA-binding domain 333 404 IPR036390 -
Vivi2g06626 438 Pfam eIF3 subunit 6 N terminal domain 6 138 IPR019010 -
Vivi2g06626 438 PIRSF Transl_init_eIF3e 1 438 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vivi2g06626 438 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 3 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vivi2g06626 438 SMART eIF3_N_2 6 138 IPR019010 -
Vivi2g06626 438 Gene3D - 235 433 - -
Vivi2g06626 438 FunFam Eukaryotic translation initiation factor 3 subunit E 229 434 - -
Vivi2g06626 438 ProSiteProfiles PCI domain profile. 220 404 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06626 Vivi-Chr2 203237454 203241581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06626 5 438 Eukaryotic Initiation Factors Gene Family AT3G57290 84.793 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06626 K03250 - gmx:100797748 828.935