Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06600 ATGGATAATATTTTTAGCATGATTTGTGTGCACTGTGGTAGTGGTGATGATGATGGAGGAAAAGTCTTGTGTTATGATTTTAAGTTCTTAAAAGATCCTTCCTCATGCATCAACCATGTGTTAGTACTTTGCTTTGATCTTTTCCTGCTAATCATGTTGTCATTCATCATAATTTTGAAATCTTCCTCATCAAGATCCTTTTGGAGTAGAGCAAGATATTCTAAGTTGCAGATAGTTTCTGCCATAACCAATGGCTCTCTTAGTTTGTTGTATTTATGTTTAGGAATTTCGGATTTAGCGGAGACATTACCTTTTAGCCACTGGCTGCAATTGCAAGAACTCTTTCATGGAGTTGCATGGTTGTTAGTAAGTTTAAGTATAAGTCTTGAGATAAAACAAATCCCAAGATCATGGATGTGGTTGTTTTCTATTCTCATGTTCATTGTTTCTGCTATATTATGTGTTTTATCCATATCTTATACAATTGAATGTAGAGAATTATTTTCTCTCAAAGTAGCTTTGGATGTTATATCATTTCCAGGAGCTAATTTGATGCTCTTATGCACATACCAAATATGTAAATCTAAAGATGTTGATAGTGAAATTGATGATAGTCTTTGTACCCCTTTAAACGACGAAATTATTCCTGTTACACCATTTGCCAAAGCTGGAGTCTTTAGTAAGATATGGTTTTGGTGGTTGAATCCATTGATGAAAATCGGTCAAGAGAAAACACTTGATAACGAGGATATCCCAAAATTAAGAGCGTCTGAGAGAGTGAAAGTTTGTTATTTATCGTTTGTAGAACGATTAGACAAAAAAAGACAAGAGGAACTATCATCACATTCATCGATTTTATGGACAATCATTTTGTGCCACCAGAGAGAGATTTTGCTAACCGGGTTCTTTGCTTTGCTCAAGGTACTGGCTCTATCTTCAACTCCTCTACTTCTGAGTTCCTTTATATCGGTCGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATACGTTAGTCATATCACTCTTGTTTATTAAAATCATAGAATCCTTATCACAAAGACAATGGTATTTCCGCGCTAGACTTGTTGGAATGAAAGTTAGATCAATACTTGCTGCGGCCATATATAGAAAAATATTAAGACTGTCCAATTCTGCTCACTCGGGCGGTGAGATAATGAATTATATCACAGTCGATAGTTGTAGAGTCGGAGAATTTCCATTTTGGTTTCATCAGACTTGGACAACAATCCTCCAACTTTGTATTGCATTAGTAATACTTTTCCGCACAATTGGACTAGCAACGTTGGCATCATTGGCTGTGATAGTTTTCACCGTGTTTTGCAATGCTCCACTAGCAAAGTTACAACACAAGTTTCAGACCAAGCTTATGGTGGCACAAGATGAGAGATTAAAGGCTACTTCTGAGGCTCTTATGAATATGAAAGTGTTGAAGCTATATGCATGGGAAATCCATTTTAAAAATGTTGTAGATTACTTAAGAAATGTGGAACTTAAATTGTTACATGTCGTGCAATTAAGAAGAACTTACCTTGTCTTTCTTTTTTGGACCTCGCCGATGTTGGTATCTTCTGCGTCTTTTGTGGCATGTTACTTCTTGAAAGTTCCTTTACATGCAAGTAATGTTTTCACTTTTTTGGCCACCGTGTGCCTTGTTCAAGAGCCAATTACACGCATCCCGGATGTTATTGCAGTGGTCATTCAAGCAAAAGTTGCATTTGCTCGAATTGTGAATTTCCTTGATGCACCGGAACTGCAGAGTGAAAATTTGAAGAATGAGTGCCTTGATTTCGGCCTCAAAGGCTCAATTTCTATAAAATATGCTGACTTTTCGTGGGAAGGTAATGCATCCAAGCCAACATTAAGGAGCATAAATTTGGAGGTTAGGCATGGCCAAAAGGTGGCTATCTGTGGAGAAGTTGGCTCGGGAAAATCAACCCTTTTAGCAACGATTCTTGGAGAAGTTCCTAAAACAAAGGGAGCTATTGATGTTAATGGGAGGTTTGCATATGTTTCTCAAGCAGCATGGATACAAATAGGTACAATTCGGGAAAATATATTGTTCGGGTCTAAGTTGGATGATCAAAGATATCAAGAAACACTCGAGAGGTCTTCATTGTTAAAGGACCTTGAGTTGTTTCCCTATGGGGACCTCACTGAAATCGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAGCAGCGAATTCAGCTAGCTCGTGCTCTTTATCAAAACGCTGACATATATCTATTGGACGATCCATTTAGTGCTGTTGATGCGCATACTGCAAAAAAATTGATCAATGAATACATCATGGAAGGACTCAAAGGGAAAACAGTTTTGCTTGTGACTCATCAAGTCGACTTCCTCCCAGCGTTTGATTCTGTTTTGTTGATGTCTGATGGGCTAATCCTACAAGCCGGTCCATATCACCAGCTATTAAACTCAAGCCCGGAATTCCTAGGTCTCGTCAATGCTCACAAGGAGACTACTGGTTCAGACCAACTTGCTGCAAGTTCTACTTTTTCCAATTCCGAAAAACGTATGCAAGAAGCATTTGTGTTGAAGCAGTTGAAAGCACCAAAAGAAGAAAACCAATTGATTAAGCAAGAAGAAAGAGAGAAGGGAGACAAAGGATTGAAGCCTTACTTACAATATCTGAATCAGACGAAAGGCTATATATTCTTCTCAATGGCTTCACTTAGTCAGCTGGTTTTTGTAGCTTGTCAGATATTGCAAAACTCGTGGATGGCTTCTAATATTGACAATCCCCTTGTCAGTACATTGCAATTGATTTTAGTTTATTTCATTATTGGTTCTTTTTCAACGGTTTTCGTGTTCACCAGAAGTCTATTTGCAGTAGCTTTGGGTCTTCAATCATCAAAATATTTATCTTCAGAGTTGATGAACTCCCTCTTTCGTGCGCCCATGTCATTTTATGACTCTACACCATTGGGAAGAATACTAAGTAGGGTCTCATCTGATATGAGCATTATGGATCTGGACATTCCGTTTAGCCTTTCTTTTGCTGTGGGAGGAACGATACTTTTTTATTCTAGTATTACGGTTTTGGCAGTTGTCACATGGCAAGTCTTGATTGTGGCTATACCAATGGTTTATGCTGCTATTTACATGCAGAGATACTATTTTGCCTCAGCGAAAGAAGTAATGCGGATGAATGGCACAACAAAATCTTTATTAGCTAATCATGTAGCTGAAACAGTTGCCGGAGCTGTAACAATAAGGGCTTATGAGGAGGAAGAACGTTATTTTGAGAAGAACCTTGATCTAATTGATATTAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCGAATGAGTGGTTGTTTCTACGATTAGAAACTATAAGTGCGGTTGTTCTCACCGCTGCAGCACTCTGCATGATTATGCTTCCCCCTGGAACATTAAGCTCAGGAATCATTGGCATGGCTCTATCTTATGGCTTTTCACTAAATGATTCATTAGAATCTTCAATACGAAATCAATGCACTGTTGCGAATTGCATAATATCAGTAGAAAGGATAAATCAATATATGCATATACAAAGTGAGGCAGAAGAAATAGTAGAAGGAAATCGTCCTCCTTTGAATTGGCCAACTGCAGGCAAAGTAGAAATAAACGACTTGAAGATACGATACAGGTCTAACGGACCACTTGTACTCGATGGGATCACATGCACATTTATAGCCGGGCATAAGATTGGTATTGTTGGAAGAACAGGCAGTGGGAAATCGACTCTTATCAGTGCTTTATTTCGTCTTGTAGAACCAGCAGGAGGAAAAATTATAGTTGACGGGATAGACATATCATCTATCGGCCTTCATGATTTGAGGTCTAGTTTCGGGGTTATACCTCAAGATCCTACTCTTTTTAATGGGACTATAAGATATAATTTGGACCCTTTATCGAAACATAGTGATCAAGAGATATGGGAGGTTCTTGAGAAGTGTCAGTTGCGACAAGTTATCAAAAGGAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAAGCTGGATCAAACTGGAGCATGGGACAAAGGCAGTTATTCTGTTTGGGGCGCGCTCTTTTAAGGAGAAGTAGGATATTGGTATTGGACGAAGCGACAGCATCAATTGATAATTCTACTGATCTGATTCTGCAGAAAACCATTAGGAATGAGTTTGCAGATTGTACCGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAGCAGGGTTCTCGCTATAAGTGATGGGAAATTAGCGGAGTATGATGAGCCACTGAGCTTGATGAAAAGAGAAGAATCATTGTTTAGAAAGCTTGTCAAGGAGTACTGGTCTCATGCAGAATCATACTGA 4383 0.3865 MDNIFSMICVHCGSGDDDGGKVLCYDFKFLKDPSSCINHVLVLCFDLFLLIMLSFIIILKSSSSRSFWSRARYSKLQIVSAITNGSLSLLYLCLGISDLAETLPFSHWLQLQELFHGVAWLLVSLSISLEIKQIPRSWMWLFSILMFIVSAILCVLSISYTIECRELFSLKVALDVISFPGANLMLLCTYQICKSKDVDSEIDDSLCTPLNDEIIPVTPFAKAGVFSKIWFWWLNPLMKIGQEKTLDNEDIPKLRASERVKVCYLSFVERLDKKRQEELSSHSSILWTIILCHQREILLTGFFALLKVLALSSTPLLLSSFISVAEGNESFKYEGYTLVISLLFIKIIESLSQRQWYFRARLVGMKVRSILAAAIYRKILRLSNSAHSGGEIMNYITVDSCRVGEFPFWFHQTWTTILQLCIALVILFRTIGLATLASLAVIVFTVFCNAPLAKLQHKFQTKLMVAQDERLKATSEALMNMKVLKLYAWEIHFKNVVDYLRNVELKLLHVVQLRRTYLVFLFWTSPMLVSSASFVACYFLKVPLHASNVFTFLATVCLVQEPITRIPDVIAVVIQAKVAFARIVNFLDAPELQSENLKNECLDFGLKGSISIKYADFSWEGNASKPTLRSINLEVRHGQKVAICGEVGSGKSTLLATILGEVPKTKGAIDVNGRFAYVSQAAWIQIGTIRENILFGSKLDDQRYQETLERSSLLKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKKLINEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSDGLILQAGPYHQLLNSSPEFLGLVNAHKETTGSDQLAASSTFSNSEKRMQEAFVLKQLKAPKEENQLIKQEEREKGDKGLKPYLQYLNQTKGYIFFSMASLSQLVFVACQILQNSWMASNIDNPLVSTLQLILVYFIIGSFSTVFVFTRSLFAVALGLQSSKYLSSELMNSLFRAPMSFYDSTPLGRILSRVSSDMSIMDLDIPFSLSFAVGGTILFYSSITVLAVVTWQVLIVAIPMVYAAIYMQRYYFASAKEVMRMNGTTKSLLANHVAETVAGAVTIRAYEEEERYFEKNLDLIDINASAFFHSFASNEWLFLRLETISAVVLTAAALCMIMLPPGTLSSGIIGMALSYGFSLNDSLESSIRNQCTVANCIISVERINQYMHIQSEAEEIVEGNRPPLNWPTAGKVEINDLKIRYRSNGPLVLDGITCTFIAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGIDISSIGLHDLRSSFGVIPQDPTLFNGTIRYNLDPLSKHSDQEIWEVLEKCQLRQVIKRKEEGLNSSVVEAGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKTIRNEFADCTVITVAHRIPTVMDCSRVLAISDGKLAEYDEPLSLMKREESLFRKLVKEYWSHAESY 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06600 1460 Gene3D ABC transporter type 1, transmembrane domain 865 1199 IPR036640 GO:0005524|GO:0016020
Vivi2g06600 1460 Gene3D ABC transporter type 1, transmembrane domain 269 588 IPR036640 GO:0005524|GO:0016020
Vivi2g06600 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 833 IPR027417 -
Vivi2g06600 1460 SUPERFAMILY ABC transporter transmembrane region 889 1199 IPR036640 GO:0005524|GO:0016020
Vivi2g06600 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1217 1451 IPR003439 GO:0005524
Vivi2g06600 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1450 IPR027417 -
Vivi2g06600 1460 CDD ABC_6TM_ABCC_D2 899 1192 IPR044726 GO:0140359
Vivi2g06600 1460 FunFam ABC transporter C family member 10 281 591 - -
Vivi2g06600 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 575 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g06600 1460 SMART AAA_5 637 810 IPR003593 GO:0016887
Vivi2g06600 1460 SMART AAA_5 1243 1435 IPR003593 GO:0016887
Vivi2g06600 1460 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524|GO:0016887
Vivi2g06600 1460 CDD ABCC_MRP_domain2 1215 1435 - -
Vivi2g06600 1460 SUPERFAMILY ABC transporter transmembrane region 286 591 IPR036640 GO:0005524|GO:0016020
Vivi2g06600 1460 CDD ABC_6TM_ABCC_D1 324 583 IPR044746 GO:0140359
Vivi2g06600 1460 FunFam ABC transporter C family member 5 601 841 - -
Vivi2g06600 1460 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Vivi2g06600 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1180 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g06600 1460 FunFam ABC transporter C family member 5 866 1198 - -
Vivi2g06600 1460 Pfam ABC transporter transmembrane region 907 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g06600 1460 Pfam ABC transporter transmembrane region 298 540 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g06600 1460 FunFam ABC transporter C family member 3 1200 1452 - -
Vivi2g06600 1460 Gene3D - 1201 1452 IPR027417 -
Vivi2g06600 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 833 IPR003439 GO:0005524
Vivi2g06600 1460 CDD ABCC_MRP_domain1 610 809 - -
Vivi2g06600 1460 Pfam ABC transporter 628 762 IPR003439 GO:0005524
Vivi2g06600 1460 Gene3D - 589 859 IPR027417 -
Vivi2g06600 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 221 1451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06600 Vivi-Chr2 202417421 202423064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06600 606 852 Calmodulin-binding Proteins AT2G36910 30.112 1.18e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06600 K05666 - gmx:100787314 2060.42