Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06553 ATGCAACGAGCAAGTGATCTTCTTCTCGGCGTTTCAATGTTCGCCGAGCCCGTCAGTATTAGAATCTTCGATCGCGCTAATTCAGCTATGAATGAATTGTGTAATATCGGAATTAGAGGTAAACCTTTATGGCATCAACATAAACCAGATCGATATGAAATTCTTAACAATATTGAATATTTGAAATATTCTGGCCGTGTTGATGCGGCGTTAATGGATATTGTTAAATTGGCTGAGGTCGGAGAATTTCAAGCTTTACCTAGCTTTGATTTGTACGGAAATCCAATCAATTCAACGTCAAATGAAAATTCCGTACAAGGTTTACGGATGGAAGCTTCCCGAGATACATCAATAATTAACGCCGGTCCGTTAGACATTGTTGAATTACTTATGAATGTGAATCAATGGTGGATGACATTTCACAAAATTGTTTCAAGAGCTACGATTCTTGGAAGCTTTATGAATAGTGTAGAAGGAAGCTATGATGGGAAATTGCATGTGCTGAATGCGGAATTTCATTTGCCTAGTCCTGTTGTACCGACTCGAGAGTGTTGTTTTGCAAGATACTGCAAACAATTCTCTCCGAACGACTGGGTTGTTGTTGATGTATCTTTGGAGGATATTTTCCCTTATCCATCTAACAATTTTCGAAGAAGACCTTCCGGTTGTTTGATCAAAGGAATGCCTAATGGATGCTCTAAGGTTACATGGGTGGAGCATGTGGAAGCTGATCATAGCCAATTGAATGATCTTTTCAAGCCATTAGTTACCTCTGGTTTGTCTTTTGGTGCAACGCGGTGGCTAGCTTCCATTGTTCGACACTTTGACTGGTCTAAAACACTTGAGGCTACACAATTTTATTCAGATGGGAAGGTTTTTATACCTCAAAGGGGAAGGGCTAGTTTATTGAAACTGGCTGATAGAATGATGAGAAAATTTTGCGCAAATCTTAGCGCAACAACTACCAATCCATGGATGCGACTCGCTCCATTTCCCGGTTCAACCGATATTAGAGTTATGATTCCGAATAATATGCCTGGTACTTCAAGTAATCCCGTTGGAACAACGATCGTTTTTAGTACTACTATTTGGCTTAATATCTCCCCGAATCGATTATTCAACTTCCTTCGCCACGAGAAATCCAGAAACAAGTGGGATATACTTTCACAATCCCTTTCAATTCAACAATTCGCATGCATGACCGTCGGCGAACATCTAGAGAATCGCGTTTCTTTGCTGCGAGCAAGTAACTCCGAGGACAAGACTGAAATCTTTTACCTGCAAGAGAGTTACGCAGACGAAGCAGCTTCCTATGTGATTTATGCTCCGCTAGACGAATCAGCATTGATTCATCTCGCGAAAGGATCCAACCCGGACAATGTAATTGCATTTCCTTCGGGGTTCGCTATAATTCCGGGAGGGTTACCCAAAAAAGGTGATAAGGGAAATAGTACTGCTAGTAACGAAAGTCTTCTTACTATATCTTTTAATCTGATTGACAAAGCTAGCATTATTACAAGTATCCCTCCTGAATCTGTTCAAACTATCTATGAGATCATTACAGAAACTGTTACTGCTATTAAGGACGCGTTATCGTGTCATAGTCAACTCAACAATTGGGTGCAAGATGAGTTGAAAAATGGCGCGGGAAAGAAGTAG 1659 0.4051 MQRASDLLLGVSMFAEPVSIRIFDRANSAMNELCNIGIRGKPLWHQHKPDRYEILNNIEYLKYSGRVDAALMDIVKLAEVGEFQALPSFDLYGNPINSTSNENSVQGLRMEASRDTSIINAGPLDIVELLMNVNQWWMTFHKIVSRATILGSFMNSVEGSYDGKLHVLNAEFHLPSPVVPTRECCFARYCKQFSPNDWVVVDVSLEDIFPYPSNNFRRRPSGCLIKGMPNGCSKVTWVEHVEADHSQLNDLFKPLVTSGLSFGATRWLASIVRHFDWSKTLEATQFYSDGKVFIPQRGRASLLKLADRMMRKFCANLSATTTNPWMRLAPFPGSTDIRVMIPNNMPGTSSNPVGTTIVFSTTIWLNISPNRLFNFLRHEKSRNKWDILSQSLSIQQFACMTVGEHLENRVSLLRASNSEDKTEIFYLQESYADEAASYVIYAPLDESALIHLAKGSNPDNVIAFPSGFAIIPGGLPKKGDKGNSTASNESLLTISFNLIDKASIITSIPPESVQTIYEIITETVTAIKDALSCHSQLNNWVQDELKNGAGKK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06553 552 Gene3D - 98 264 IPR023393 -
Vivi2g06553 552 Pfam START domain 100 271 IPR002913 GO:0008289
Vivi2g06553 552 SUPERFAMILY Bet v1-like 298 472 - -
Vivi2g06553 552 CDD START_ArGLABRA2_like 21 274 - -
Vivi2g06553 552 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 531 IPR042160 -
Vivi2g06553 552 ProSiteProfiles START domain profile. 15 280 IPR002913 GO:0008289
Vivi2g06553 552 SUPERFAMILY Bet v1-like 105 275 - -
Vivi2g06553 552 SMART START_1 62 277 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06553 Vivi-Chr2 201634492 201637109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06553 1 533 Homeobox Transcription Factor Family AT4G04890 39.488 3.39e-115 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06553 K09338 - jre:108992281 474.167