Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06548 ATGGCTTCTAGTAGCAACAACTCCTCCTCCCTCCGAGTCTGTAAATACGACGTGTTTCTCAGTTTCCGAGGCACCGACACTCGCAACACTTTCATCGATCATCTCTATCACCATCTTATCCGAAAAGGTATTTCCGTCTTCAAGGACGATCAAACTCTCCAGAAAGGAGAATCTATTTCACCGCAGCTTCTGCAAGCAATTCGAGATTCAAGGGTTTCTATAGTTGTCTTCTCAAAGTATTATTCTAACTCAACATGGTGTTTGAATGAAATGGCTGCTATCGCGGATTGCCACACACAATTCAATCAAACTGTTATCCCTGTTTTCTACAATGTTGATCCATCTCATGTGAGAAAGCAGATTGGGCTTTTCGAAATTAGTTTTAAGTCAAGGTCACAAACTAAGAAGTTAAAACCTGACCTAATTGATCAATGGAAGAGAGCTACGACTGAGTTGGCCAATTTAGTTGGATTTGATGTTAGAGACAAGCCAGAGTTTTCAGAGATTGAAAAAATTGTTCAAGCAGTAATAAAATCATTGAATCATAAATTCTCAGGGTTTACCAATGATCTTGTTGGGATGCAACCTCGTGTAGAAGAATTAGAAAAGATTCTAAAATTGAACTCAAAGGATGATGATTTTCGAGTTCTGGGAATTTGGGGGATGGGTGGAGTAGGGAAGACAACTCATGCTGCTGCTTTGTACGATAGAATCTCTTATCAGTTTGATGCTCGTTGTTTTATTAGTAACACAAGCAAACTTTATATGGATGGTGGTATTGTTGCTGTACAAAAACAAATTCTTCGTCAAACTCTAGACGAAAGAAATCTAGACTCTTACGATACTTGTGACATTGCCGAGATTATGTTAAATAGGCTTCATAGTGGCATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAATTAGAGCAATTGCAGGAATTAGGTATAAATCCTAAATTACTTTGGAGTGGTAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGTATATGAGGCAGATACAATACACAAAGTTCCCATGTTGAACAGTAATGATGCATGTGAACTTTTTCGTAGAAGAGCCTTCAAAGGTGAAGACCAAAGCAGCAATTGTGTTGAGTTGATTCCAGAGATACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCTACTCAATGGATAGATGCTTTGGATAGATTGAAGAACAATCCAGACAGTAGAATTATGGATGTGCTTCAGATGAGTGTTGATGGACTAGAACATGAGGAGAAGGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAAGTTTATGTAAAGCGAATCTTAGATGCTTGTGGACTACACCCTCACATTGGGATTCAAAGAATCCTTGAGAAATCTCTAATTACCATTAAAAACCAGGAGATTCATATGCATGATATGTTACAAAAATTAGGGAAGAAAATCGTCCGGCACCGATTTCCCGAAGAGCCAGGATCGTGGAGTAGATTATGGCAATATCATGATTTCTATCAAGTATTGACAACAGAAACGGGAACAAACAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAAATGCAGGGCTGAAGGATTTTCAAATATGAGGAACCTTGCACTTCTCATATTGTATCATAACAATTTTTCAGGAAATTTGGATTTTCTTTCCCACAACTTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATCTTATGGAATTGAATATGCCTGATAGTAGCATTCAACGACTGTGGGAAGGCCGCAAGGATCTCCCTTTTTTGAAAAGTTTAGATTTGAGCAACTCCAAGTATCTTAGAGAGACTCCAAAATTTTTTTGGACCCCAAAACTGGAGCGCCTAGATTTTACCGGATGCACAAACTTATTACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTTTTCTTAAGTTTGCAAAACTGCAGCAGTTTGGTCGACCTCGATTTTGGTAGTGTATTGAATTTAAATTCTTTGAGAGTTCTACGTCTCTCTGGTTGCTCAAAACTTGAAAACACGCCAGATTTTACTGGGGCATCAAATCTTGAGTATCTTGATATGGACGGTTGTACAAGTTTATCCAAAGTTCATGAATCTATCGGGGCTCTTTCAAAGCTTAGATTCTTGAGTTTGAGGGATTGCATAACTCTTGCCGGAATACCCAATAGCATTAATACCATGACTTCTCTTGTAACTCTAGATTTATGCGGCTGCTTAAAACTTGTGACTCTGCCCCTCAGATGGACTTTCAGTTCTTATATGAAAGATACGACTCTGCCCCTCGAACGGACTTTCTATTCTTCCCCTATGGAATCCTTAATTTTTCTTGATGTAAGCTTTTGCAATCTTCATAAAGTACCTGATGTTATTGGAGAGCTACGGTGTTTAGAAAGACTAAGTCTACAAGGAAACAACTTTAAGTTACTGCCCTATACTTTCAATAAGCTTGGAAAGCTGGCATATCTGAACTTGGCTCATTGCCATGAGCTTCAAACTTTTCCACATATAAATACACTGAAAGATTCATCTCTAGGGGGAAGTTATTTTAAAATGACATCGGGATCGCGTGATCATAGGTCAGGATTATATGCTTTCGACTGCCCCAAAGTGAAGTTCTTCCTATCTAGTCCCCAAGAGTATTTTACCAAGTATATTTATCAATGGTTAGAAAGACTTCTTAAGGAACCCCGTCACTTTCGGTGTGGCTTTGACATTATTGTTCCTTGGCCTGAATGTGTTGATCATCCACCTACTCATCCTATTCCAATGTGGTTCTGTCACCAATTTGATGGGCATTCAATAGTAAGTATAGTACAGTCTAATCTGGATGACAACTGGATTGGCTTTTCCTTTTGTGTAGCATTTGAGGTAAACAACCTTTCTGCAAATTCTGGTTCATCACATGGTTCCTTGTCCTCGGAACTGCCACATCCTTTTTATCTTTCTTTTGAAAGTGAACAAACGGAAGAACGCTTCGATATGCTACTTAGTTTGGAATTGGACAAAATTGATGGATCTAAACATCTTTGGATAATTTATATCTCTCAAGAGCATTGCCACTTTGTGAAAACAGGAGCACATATCTCATTTAAAGCCTGCCCAGGTTTGATCATAAAGAAATGGGGATTGCGCGTGCTAATCGAGAAGAAGGGTGCAGTAAAACTATCTTCACATGGCTTTGAAGAATCTGAAGTGCATCATCTTATGTTTGATTATGTGGAAAAAAACATCAGCAGGCATGGACCTAAAATTCAGCTTCCCTACAATTGGTTGGTTACTGAGGAAGAGGAAGTTGAGAATTCTCAAGCCAAGTCAAAAGAAATTAATCTTTCTAATCTAGGTCTTTAG 3465 0.3841 MASSSNNSSSLRVCKYDVFLSFRGTDTRNTFIDHLYHHLIRKGISVFKDDQTLQKGESISPQLLQAIRDSRVSIVVFSKYYSNSTWCLNEMAAIADCHTQFNQTVIPVFYNVDPSHVRKQIGLFEISFKSRSQTKKLKPDLIDQWKRATTELANLVGFDVRDKPEFSEIEKIVQAVIKSLNHKFSGFTNDLVGMQPRVEELEKILKLNSKDDDFRVLGIWGMGGVGKTTHAAALYDRISYQFDARCFISNTSKLYMDGGIVAVQKQILRQTLDERNLDSYDTCDIAEIMLNRLHSGIKVLLVLDNVDQLEQLQELGINPKLLWSGSRIIITTRDEHILRVYEADTIHKVPMLNSNDACELFRRRAFKGEDQSSNCVELIPEILKYAQNLPLAIKVVGSFLCTRDATQWIDALDRLKNNPDSRIMDVLQMSVDGLEHEEKEIFLHIACFFKGEREVYVKRILDACGLHPHIGIQRILEKSLITIKNQEIHMHDMLQKLGKKIVRHRFPEEPGSWSRLWQYHDFYQVLTTETGTNNVKAIVLDQKESFSKCRAEGFSNMRNLALLILYHNNFSGNLDFLSHNLRYLLWHGYPFTSLPSNFEPYYLMELNMPDSSIQRLWEGRKDLPFLKSLDLSNSKYLRETPKFFWTPKLERLDFTGCTNLLQVHPSIGHLTELVFLSLQNCSSLVDLDFGSVLNLNSLRVLRLSGCSKLENTPDFTGASNLEYLDMDGCTSLSKVHESIGALSKLRFLSLRDCITLAGIPNSINTMTSLVTLDLCGCLKLVTLPLRWTFSSYMKDTTLPLERTFYSSPMESLIFLDVSFCNLHKVPDVIGELRCLERLSLQGNNFKLLPYTFNKLGKLAYLNLAHCHELQTFPHINTLKDSSLGGSYFKMTSGSRDHRSGLYAFDCPKVKFFLSSPQEYFTKYIYQWLERLLKEPRHFRCGFDIIVPWPECVDHPPTHPIPMWFCHQFDGHSIVSIVQSNLDDNWIGFSFCVAFEVNNLSANSGSSHGSLSSELPHPFYLSFESEQTEERFDMLLSLELDKIDGSKHLWIIYISQEHCHFVKTGAHISFKACPGLIIKKWGLRVLIEKKGAVKLSSHGFEESEVHHLMFDYVEKNISRHGPKIQLPYNWLVTEEEEVENSQAKSKEINLSNLGL 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06548 1154 Gene3D Ribonuclease Inhibitor 796 892 IPR032675 -
Vivi2g06548 1154 Gene3D Ribonuclease Inhibitor 689 793 IPR032675 -
Vivi2g06548 1154 Gene3D - 351 435 IPR042197 -
Vivi2g06548 1154 Pfam NB-ARC domain 201 419 IPR002182 GO:0043531
Vivi2g06548 1154 Pfam C-JID domain 957 1086 IPR045344 -
Vivi2g06548 1154 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 709 IPR044974 GO:0006952
Vivi2g06548 1154 Gene3D Ribonuclease Inhibitor 479 682 IPR032675 -
Vivi2g06548 1154 Gene3D - 178 347 IPR027417 -
Vivi2g06548 1154 SMART till_3 15 155 IPR000157 GO:0007165
Vivi2g06548 1154 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Vivi2g06548 1154 SUPERFAMILY L domain-like 491 876 - -
Vivi2g06548 1154 Pfam TIR domain 15 183 IPR000157 GO:0007165
Vivi2g06548 1154 Gene3D - 13 177 IPR035897 -
Vivi2g06548 1154 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Vivi2g06548 1154 PRINTS Disease resistance protein signature 216 231 - -
Vivi2g06548 1154 PRINTS Disease resistance protein signature 293 307 - -
Vivi2g06548 1154 PRINTS Disease resistance protein signature 693 709 - -
Vivi2g06548 1154 PRINTS Disease resistance protein signature 386 400 - -
Vivi2g06548 1154 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Vivi2g06548 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06548 Vivi-Chr2 201567728 201574398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06548 694 873 WRKY Transcription Factor Family AT4G12020 32.597 2.57e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06548 - - var:108332841 1356.27