Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06546 ATGGATTCAAACTCAAATATTACAGAATTGTTTCTCTCATGGAGCTCCACGCTCCTGCAACCTTTTTGGGCTCTGTTGGATCATTTTTCTTTATCCGATTTCAGCATGATGGAAGATACAGTTTCTTCCATGGATTCTAATTTCACTCAAAACTATAGATATGATGTGTTTATAAGCTTTAGAGGTCCTGACACACGCAACACTTTCGTTGATCATCTTTATGCTCATCTAGCCAAAAAAGGAATCTTTGTTTTCAAAGATGACAGACGCCTTGAGAAAGGACAATCCCTGTCACCACAGCTTCTACAAGCAATTGAGAATTCTAAAACTTCTATTGTTGTCTTCTCAAAAAGATACGCCGAATCAACGTGGTGTTTGGAAGAAATGGCTGCTATTGCTGAATGTGCTAATAAATTCAAACACAAAGTTTTCCCCGTTTTCTATCATATTGATCCATCGGATGTGCGGAAACAAAGTGGACCTTACCAAAAAGCTTTTCTTTCACACACGAAGAAATTCAAAGATGATTTAGACAAGGTCAGGAGATGGAGGAGAGCTATGATTCGTTTGACTGCATTAGTTGGTTGGCATGTCAAGGACATGCCGGAGTTTGAAGTGGTTGAAAGTGTTGTTCAGGAGGTGATAAAAACATTAGGCCATAAATTATCCGGGTTTGATGACCTTGTTGGGATTGAACCTCGAGTAGAAGCATTGAAAATTCTTTTAAAATTAGGCTCAAAGGATGATGAATTTCGGGTTATAGGAATTAAAGGGATGGGTGGAATAGGCAAGACAACACTTGCTACTGTCTTGTATGATAGAATATCTTGTATGTTTGATGCTTCTTGTTTCATTGAGAATGTAAGCAAAATTTATAAAGACGGAGGTGCTATTGCTATTCAGAAACAAATCCTTTGTCAAGCCTTCAATGAGATAAATCTAGAGAGATTCAGTCCTTCTGAAGTATCTGCGATTTTAGGAAATAGACTTAGCAACATAAATGTGCTCATAGTTCTCGACAATGTTGATGGATTAAAGCAAGTGCAAGAGCTGGCAATTGATCACAAACTTCTTCACCCAGAAAGTAGAATGATCATTACAACTAGGGATGCACATATTCTAAAAGTGTTTGGAGCGCATGAAGTGTATGAGGTTCCATTGTTGAATAGTAAAGATGCTTGTGAACTTTTTTGTAAAAAAGCCTTCCAAAGTGAAGACCAAAGTAGCAGTTGTGTTGAGTTGATTCCTGAGGTACTCAGATATGCACAACATCTTCCATTGGCAGTTAAAGTACTTGGTTCTTTCTTGTGTACCCGAGATGCTGCCCAATGGAGAGATGCATTGGATAGGTTGAGGAACAATCCAAACAATGATGTCATGGATGTGCTTCAGATGAGTGTTGACGGATTACAACACGAGGAGAAAGGAATATTTTTGCATATTGCTTGTTTCTTTAACGGGGAAAGGGAAGATTATGTCAAGCGTATTCTAGATGCTTGTGAATTGCACGCTCACATTGGAATTCAAATCATGCTTAAGAAATCACTTATAACCATTAAAAACCAGGAAATTCATATGCATGCAATGTTACAGGAATTGGGGAAGAAAATCACGAGGCACAATTTTCCCGATGAGCCAGGATGTTGGACTGGATTATGGCAATACAAGGATTTCAATCACGTCTTGATGACAGATACGGGAACAAATAATGTTAGAGCCATGGTTCTAGATCAGAAAGAAAATTCCTCCAAATGCAGGGCCGAAGGATTTTCAAAAATGAAGAACCTTGCACTGCTCATATTGTATCATAACAAATTTTCAGGAAATCTCAATTTTCTTTCCAACAACCTGCGATTTCTTTTGTGGCATGGATACCCTTTTACTTCTCTGCCGTCAAAATTTGAGCCTAGTTATCTTGTGGCATTGAATCTACCTGATAGTAGCATTCAACGACTGTGGGAAGGATGCAAGGAATTTCCCAGTTTGAAAAGGATGGATTTGAGCAACTCCAAATATTTAATAGAGACTCCAAATTTTCTTTGGACCCCGAAACTGGAGCGGCTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTTACCGAACTTGTTTTCTTAAGTTTGCAAAACTGCAGCAGTTTGGTTGACCTTGATTTTGGTAGTGTATCAAGATTGAGTTCTTTGAGAGTTCTACGCCTTTCTGGTTGTGCAAAACTTGAAAAGACACCTGATTTTACCGGGGCATCAAAACTCGAGTACCTTGATATGGATGGATGTACAAGTTTATCCACAGTTCATGAGTCCATTGGGGCTCTTGCAGACCTTACATTCCTGAGTTTGAGAGACTGTACAAATCTTGTTGAAATGCCCAATAACAGTAATAGGATGATATCTCTTATAACTCTAGATTTACATGGGTGCTTTAAACTTAAAACTCTACCATTAGAACATAGTACTCTACAATATTCTCGTCATCTGCATTCTTTGATTTTTCTGGATCTAAGCTTTTGCAGTCTTCATCAAGTACCTGTTGCTATTGGAGGGCTAAAATGTTTAGAAAGACTAAACCTACAGGGAAATAACTTTGATTCACTACCTGATGAAATCAACCGTCTTGAAAGTTTAGCATATTTAAACTTATCTCATTGTCACGAGCTTCAAACTTTTCAATGGCTACCTTCAAAAAGTGCTTCTTCGGGAGGAAGATACTTTAAAATAGCTTCGGGATCTCGTGACTATAGGTCAGGATTATATATTTTTGACTGCCCCAAGATGACGAAAAGCCCTGAAACCCAATCCGCAGATATACAATATACATGGTTACAAAGACTGCTTAAGCATCCCCATTACTTTCGGTGTGGCTTTGACATTGTTGTTCCATGGAATTGGAATAACACTCCAGTATGGTTCAATCACCGATTTGACGGGGGGTCAATAGTGAGGATAGTAGCATCTGAAGAGACTGAGAATTGGTTTGGTTTTGCTTTCTGTGTGGCATTTGAGGTAAACAGTGGTGCTGCAAATTCTGTTTCTCTACAAGATACATTTTCCCCGGCATTACCGCATCCTTTTTACCTTTCTTTCGAAAGCGAGCACACGGAAGAACGCTTTGACATGCCACTTAACTTGGAACTGGACAAAGTCGATGGCTCCAAACATCTTTGGCTAATCTATATCTCTAGTGAGCATTGCCATTTTGTGAAAACAGGAGCTCATATCACATTTAAAGCTTGTCCAGGTTTGATCATAAAGAAATGGGGAATGAGGATGTTAATCAAGAGCATAATTAAAAATCCATTTGGGTTATTTCGTATAGAGTCTGCCCTCGGCTTATTGAATTGCTTTACAATGTCAGATGAACACAGTCTTTACTTTGATTCTGTACAAGAAAACAGCAGTAGGTCTGGACCTAAAATTCAGCTTCCCTACAATTGGTTGGTTACTGAGGAAGAGGATAATGAGAATTCTCGAGCAAAGTTAAAAGAAATTGATCTTTATAATCTGGGCCTTTAA 3531 0.3857 MDSNSNITELFLSWSSTLLQPFWALLDHFSLSDFSMMEDTVSSMDSNFTQNYRYDVFISFRGPDTRNTFVDHLYAHLAKKGIFVFKDDRRLEKGQSLSPQLLQAIENSKTSIVVFSKRYAESTWCLEEMAAIAECANKFKHKVFPVFYHIDPSDVRKQSGPYQKAFLSHTKKFKDDLDKVRRWRRAMIRLTALVGWHVKDMPEFEVVESVVQEVIKTLGHKLSGFDDLVGIEPRVEALKILLKLGSKDDEFRVIGIKGMGGIGKTTLATVLYDRISCMFDASCFIENVSKIYKDGGAIAIQKQILCQAFNEINLERFSPSEVSAILGNRLSNINVLIVLDNVDGLKQVQELAIDHKLLHPESRMIITTRDAHILKVFGAHEVYEVPLLNSKDACELFCKKAFQSEDQSSSCVELIPEVLRYAQHLPLAVKVLGSFLCTRDAAQWRDALDRLRNNPNNDVMDVLQMSVDGLQHEEKGIFLHIACFFNGEREDYVKRILDACELHAHIGIQIMLKKSLITIKNQEIHMHAMLQELGKKITRHNFPDEPGCWTGLWQYKDFNHVLMTDTGTNNVRAMVLDQKENSSKCRAEGFSKMKNLALLILYHNKFSGNLNFLSNNLRFLLWHGYPFTSLPSKFEPSYLVALNLPDSSIQRLWEGCKEFPSLKRMDLSNSKYLIETPNFLWTPKLERLDFTGCTNLIQVHPSIGHLTELVFLSLQNCSSLVDLDFGSVSRLSSLRVLRLSGCAKLEKTPDFTGASKLEYLDMDGCTSLSTVHESIGALADLTFLSLRDCTNLVEMPNNSNRMISLITLDLHGCFKLKTLPLEHSTLQYSRHLHSLIFLDLSFCSLHQVPVAIGGLKCLERLNLQGNNFDSLPDEINRLESLAYLNLSHCHELQTFQWLPSKSASSGGRYFKIASGSRDYRSGLYIFDCPKMTKSPETQSADIQYTWLQRLLKHPHYFRCGFDIVVPWNWNNTPVWFNHRFDGGSIVRIVASEETENWFGFAFCVAFEVNSGAANSVSLQDTFSPALPHPFYLSFESEHTEERFDMPLNLELDKVDGSKHLWLIYISSEHCHFVKTGAHITFKACPGLIIKKWGMRMLIKSIIKNPFGLFRIESALGLLNCFTMSDEHSLYFDSVQENSSRSGPKIQLPYNWLVTEEEDNENSRAKLKEIDLYNLGL 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06546 1176 ProSiteProfiles Leucine-rich repeat profile. 857 878 IPR001611 GO:0005515
Vivi2g06546 1176 FunFam Disease resistance protein (TIR-NBS-LRR class) 50 220 - -
Vivi2g06546 1176 Pfam TIR domain 54 221 IPR000157 GO:0007165
Vivi2g06546 1176 Gene3D Ribonuclease Inhibitor 554 724 IPR032675 -
Vivi2g06546 1176 SUPERFAMILY L domain-like 586 896 - -
Vivi2g06546 1176 ProSiteProfiles TIR domain profile. 52 218 IPR000157 GO:0007165
Vivi2g06546 1176 Pfam C-JID domain 970 1100 IPR045344 -
Vivi2g06546 1176 SUPERFAMILY "Winged helix" DNA-binding domain 458 562 IPR036390 -
Vivi2g06546 1176 Gene3D - 387 471 IPR042197 -
Vivi2g06546 1176 Gene3D - 48 220 IPR035897 -
Vivi2g06546 1176 Gene3D Ribonuclease Inhibitor 725 826 IPR032675 -
Vivi2g06546 1176 Gene3D Ribonuclease Inhibitor 827 950 IPR032675 -
Vivi2g06546 1176 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 746 IPR044974 GO:0006952
Vivi2g06546 1176 SMART till_3 53 193 IPR000157 GO:0007165
Vivi2g06546 1176 SUPERFAMILY Toll/Interleukin receptor TIR domain 43 195 IPR035897 -
Vivi2g06546 1176 SMART LRR_typ_2 855 878 IPR003591 -
Vivi2g06546 1176 SMART LRR_typ_2 832 854 IPR003591 -
Vivi2g06546 1176 Pfam NB-ARC domain 241 457 IPR002182 GO:0043531
Vivi2g06546 1176 PRINTS Disease resistance protein signature 329 343 - -
Vivi2g06546 1176 PRINTS Disease resistance protein signature 253 268 - -
Vivi2g06546 1176 PRINTS Disease resistance protein signature 422 436 - -
Vivi2g06546 1176 PRINTS Disease resistance protein signature 729 745 - -
Vivi2g06546 1176 Gene3D - 221 381 IPR027417 -
Vivi2g06546 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06546 Vivi-Chr2 201551363 201556149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06546 48 882 WRKY Transcription Factor Family AT4G12020 29.574 2.58e-93 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06546 - - vvo:131643801 1284.63