Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06538 ATGGATTCAAACTCTAAATTTACAGACACGTCGCTCTCACGGAGGTCTTTGCTCCTGCAACCATTTCGAACAGTATTGGGTTGTTTTTCGCAGTCAAATTTGGGCCAGCAAGGTTCAGCTTCTTCCAGTCCTTCCATCGATTCCAATTGTGTCCATACCTATAGATATGATGTGTTTATTAGTTTCAGAGGCGCCGACACCCGCAACACTTTTGTTGATCATCTTTATGCTCATCTAACAAGAAAGGGTATTTTTGCCTTCATGGATGATAAAAGGCTTGAGAAAGGAGAATCCCTTTCGCCGCAACTTCTTCAAGCTATTCAAAATTCTAGGGTTTCTATTGTTGTCTTCTCTGAAAGATATGCAGAGTCTACGTGGTGTTTGGAAGAGATGGCTACTATTGCTGAATGTCGTAAAGAATTCAATCAAAAAGTATTTCCTGTTTTTTATGATGTCGATCCATCTCATGTACGAAAACAAATTGGGGTGTACCAGAATGACTTTGTTTTACACAAGAAGAAATTCAAGCCCGATCCAAACAAGGTTGGGAGATGGGTGAATGCTATGAAGGTTATAGCTAACTTAGTCGGTTGGGATGTCAGGAACAAGCCAGAGTCTATAGAGATTGAAACAATTGTTCAAGCAGTAATAAAATCTTTGAATCATAAATTCTCAGGCTTTACAAGCGATCTTGTTGGGATGCAACCTCGCATAAAAGAATTAGAAAAGCTTCTAAAATTGGAATCAAAGAATGATGGCTTCCGAGTTCTAGGAATTTGGGGGATGAGTGGAGTAGGAAAGACAACTCATGCTACTCTTTTGTACGATAGAATCTCTTATCAGTTTGATGCTCGTTGTTTTATTAATAACACAAGCAAACTTTATATGGATGGTGGTATTGTTGCTGTACAAAGACAAATTCTTCGACAAGCTCTAGACGAAGGAAATCTTGACTCATATGATACTTGTGAAATTTCCGGGATTATGATTAATAGGCTTCACAGTTGCACTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAATTAGAGCAGTTGCAGGAATTAGGTATAAATCCTAGATTACTTGTGAGTGGCAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGTATATGGAGCAGATAAAATTCACAAAGTTTCACTGTTGAATAGTAACGATGCTTCTGAACTTTTTCTCAGAAAAGCCTTCAAAGGTGAACACCATAGCAGCAGTTGTGTTGAGTTGATTCCAGAGGTACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCTACTCAATGGACAGATGCTTTGGATAGATTGAAGAACAATCCAGACAGTAGAATTATGGATGTGCTTCAGATGAGTGTTGATGGACTAGAACATGAGGAGAAGGAAATATTTCTGCACATTGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCACATAGGACTTCAAAGAGTCATTGAGAAGTCACTCATTACCATTAAAAACCAAGAGATTCATATGCATGATATGTTACAAGAACTTGGGAAGAAAATTGTTCGGCACAGGTATCTAGACGATCCAGGATTGTGGAGTAGAGTATGGCGATGCAATGATTTCTATCATGTCTTGGAGACAAAAACGGGAACAAACAATAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAATTTCTCCAAATGCAGGGCTGAAGGATTTTCAAATATGAGCAACCTTGTACTTCTCATGTTGTATCATAACAACTTTTCAGGAAATTTGGATTTTCTTTCCAACAATCTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGCCAAATTTTGAGCCAGATTATCTTGTGGAATTGAATATGCCTGATAGTAGCATTCAACGACTGTGGGAAGGCCGGAAGGAACTACCTAATTTGAAAAGGATGGATTTGAGCAACTCCAAGTATCTTATAGAGAGTCCAAAGTTTTTTTGGACCCCAAAACTGGAGCGGTTAGATTTTACAGGTTGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTGACAGAACTTGTTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGTTGACCTTGATTTTGGTAGTGTATCAAGATTAAGTTCTTTGAGAGTTCTACGCCTTTCTGGCTGTACAAAACTTGAAAAGACCCCCGATTTTACCGGGACATCAAATCTTGAGTACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAATCCATTGGGGATTTGACAAAGCTTAAATTCTTGAGTTTGAGAAACTGCCCAAATCTGGTTGAAATGCCCGATAGCATCAATAAGATGACATCCCTTGTAACTCAAGATTTTTGCGGTTGCTCGAGTCTTACAATTTTACCCTTGAAATGGACTCGTTATGATCATTTGAGATCTTTGACTTTCTTAGATTTAAGCTTTTGCAATCTTCATGAACTGCCAAATACTATTACCGCGTTAAAGATGTTAGAAAGACTAAATCTGCAAGGAAACAAATTCCGTTCACTACCTGATGTTTTCTCCTGTCATCGCAACCTAGCATATGTAAACTTATCTCATTGCCATGAGCTTGAAACTATTGAACTCGTACCATCATATAGTGCTTCACGACGAGGAAGATATTGTAACATAGCAGTGGGATCTCGTGATCATAGGTCAGGATTATATATATTTGACTGCCCTAAGCTCATGATGAAACCCAAAAACAAACCCATAGCATATATATGTTCACAAAGAATACTTCAGAGTTCCCATCACTTTCGGGGTGGCTTTGACATTGTCTTTCCTTCGGATTGGGAAAACATTGATTTTCCGTCAAGTTGTAGTATTCCAAAATGGTTCAATCACCAATTTGATAGTGATTCAATAGTAAGGATAATAGATTTTGACGAGTTTGACAAGAAGTTTGGCTTTGCCTTCTGTGTGGCATTTGAGGTAAACAACTGTCGTGCGAATTCTAGTTTGTCACAGGATTCATTTTCCTCAGCACTCCCACATCCTTTTTATCTTTCTTTTGAAAGTGAATACACAGAGGAACGCTTTGATATGCCGCTCAGTTTGGAACTGCACAAAATTGATGGCTCCAAACATCTTTGGCTAATCTATATCTCTCAAGAGCACTGCCATTTTTTAAAAACTGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGTTAATAAAGAAATGGGGATTGCGTTTGGTAATCAAGGATATAGAGTTATCATATCCTCTCCCTTTGAAATGCTCATCGGACACCGATGTGCCCCAACTTTTCTTCGAATATGTACAAAAAACCAGCATGAGGTCTGGAACTAAAATCCAACTTCCTTACAATTGGTTGGTTACTGAAGATGAAGAAGTTCAGAATTCTGGAGCCAAGTCAAAAGAAACCAATCTTTCTAATCTCGGCCTTTAG 3528 0.3827 MDSNSKFTDTSLSRRSLLLQPFRTVLGCFSQSNLGQQGSASSSPSIDSNCVHTYRYDVFISFRGADTRNTFVDHLYAHLTRKGIFAFMDDKRLEKGESLSPQLLQAIQNSRVSIVVFSERYAESTWCLEEMATIAECRKEFNQKVFPVFYDVDPSHVRKQIGVYQNDFVLHKKKFKPDPNKVGRWVNAMKVIANLVGWDVRNKPESIEIETIVQAVIKSLNHKFSGFTSDLVGMQPRIKELEKLLKLESKNDGFRVLGIWGMSGVGKTTHATLLYDRISYQFDARCFINNTSKLYMDGGIVAVQRQILRQALDEGNLDSYDTCEISGIMINRLHSCTKVLLVLDNVDQLEQLQELGINPRLLVSGSRIIITTRDEHILRVYGADKIHKVSLLNSNDASELFLRKAFKGEHHSSSCVELIPEVLKYAQNLPLAIKVVGSFLCTRDATQWTDALDRLKNNPDSRIMDVLQMSVDGLEHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGLQRVIEKSLITIKNQEIHMHDMLQELGKKIVRHRYLDDPGLWSRVWRCNDFYHVLETKTGTNNNVKAIVLDQKENFSKCRAEGFSNMSNLVLLMLYHNNFSGNLDFLSNNLRYLLWHGYPFTSLPPNFEPDYLVELNMPDSSIQRLWEGRKELPNLKRMDLSNSKYLIESPKFFWTPKLERLDFTGCTNLIQVHPSIGHLTELVFLCLQNCSSLVDLDFGSVSRLSSLRVLRLSGCTKLEKTPDFTGTSNLEYLDMDECTTLSKVHESIGDLTKLKFLSLRNCPNLVEMPDSINKMTSLVTQDFCGCSSLTILPLKWTRYDHLRSLTFLDLSFCNLHELPNTITALKMLERLNLQGNKFRSLPDVFSCHRNLAYVNLSHCHELETIELVPSYSASRRGRYCNIAVGSRDHRSGLYIFDCPKLMMKPKNKPIAYICSQRILQSSHHFRGGFDIVFPSDWENIDFPSSCSIPKWFNHQFDSDSIVRIIDFDEFDKKFGFAFCVAFEVNNCRANSSLSQDSFSSALPHPFYLSFESEYTEERFDMPLSLELHKIDGSKHLWLIYISQEHCHFLKTGAHITFKACPGLLIKKWGLRLVIKDIELSYPLPLKCSSDTDVPQLFFEYVQKTSMRSGTKIQLPYNWLVTEDEEVQNSGAKSKETNLSNLGL 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06538 1175 SMART till_3 55 195 IPR000157 GO:0007165
Vivi2g06538 1175 Pfam Leucine Rich Repeat 643 660 IPR011713 -
Vivi2g06538 1175 Gene3D - 222 386 IPR027417 -
Vivi2g06538 1175 Gene3D - 50 221 IPR035897 -
Vivi2g06538 1175 SUPERFAMILY L domain-like 530 897 - -
Vivi2g06538 1175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 56 752 IPR044974 GO:0006952
Vivi2g06538 1175 Gene3D Ribonuclease Inhibitor 767 902 IPR032675 -
Vivi2g06538 1175 Gene3D Ribonuclease Inhibitor 565 759 IPR032675 -
Vivi2g06538 1175 SMART LRR_typ_2 857 879 IPR003591 -
Vivi2g06538 1175 SMART LRR_typ_2 834 856 IPR003591 -
Vivi2g06538 1175 Gene3D - 391 475 IPR042197 -
Vivi2g06538 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 485 IPR027417 -
Vivi2g06538 1175 FunFam Disease resistance protein (TIR-NBS-LRR class) 52 222 - -
Vivi2g06538 1175 ProSiteProfiles TIR domain profile. 54 220 IPR000157 GO:0007165
Vivi2g06538 1175 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 198 IPR035897 -
Vivi2g06538 1175 PRINTS Disease resistance protein signature 333 347 - -
Vivi2g06538 1175 PRINTS Disease resistance protein signature 256 271 - -
Vivi2g06538 1175 PRINTS Disease resistance protein signature 662 678 - -
Vivi2g06538 1175 PRINTS Disease resistance protein signature 426 440 - -
Vivi2g06538 1175 ProSiteProfiles Leucine-rich repeat profile. 859 880 IPR001611 GO:0005515
Vivi2g06538 1175 SMART AAA_5 253 393 IPR003593 GO:0016887
Vivi2g06538 1175 Pfam C-JID domain 979 1108 IPR045344 -
Vivi2g06538 1175 Pfam TIR domain 56 223 IPR000157 GO:0007165
Vivi2g06538 1175 Pfam NB-ARC domain 241 459 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06538 Vivi-Chr2 201414676 201422663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06538 56 897 WRKY Transcription Factor Family AT4G12020 30.991 4.20e-90 318