Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06535 ATGCAAGGAGCTGAAGCTTCCAATTCTTCCATGGATTATAGTAACAATCAAAGCTGTAGATATGACGTGTTTATCAGTTTCAGAGGTCCTGACACACGCAACAAATTTGTCGACCATCTTTATAATCATCTAACTAGAAAAGGTATTTTTGCCTTCAAGGATGATAAAAGGCTTGAGAAAGGAGAATCCCTTTCCCCGCAACTTCTACGAGCAATTAAAAATTCACGGATTTCTATTGTTGTCTTCTCCGAAAGATATGCCAAGTCCAAGTGGTGTTTGGAAGAGATGGCTACTATTGCTGAATGCCGTATAGAACTCAATCAAAAAGTATTTCCTGTTTTTTATGATATCGATCCATCTGATGTACGAAATCAGAATGGGGTGTACGAGAACACTTTAAATGTAGACAGGATGAGTTCCAAACATGGTTGGAATAAGGCTGTGAGATGGGTGAAGGCTATGCGTGTTTTAGCTAACTTAGTCGGTTGGGATGTCAGGAACAAGCCAGAGTCTATAGAGATAGAAAATATTGTTCAAGCAATAATAAAAACATTGAATCATAAATTCTCAGGGTTTACCACCGATCTTGTTGGGATACAACCTCGCATAGAAGAGTTAGAAAAGCTTCTAAGATTGAGCTCAAAGGATGACGACTTTCGAGTATTGGGAATTTGGGGGATGGGTGGAGTAGGGAAGACAACTCATGCTGCTGTTTTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTAATAACACAGGCAAACTTTATATAGATGGTGGTGTTGTTGCTGTACAAAAACAGATTCTTCGTCAAGCTCTAGATGAAAGAAATCTAGACTCATACGATACTGGTGAGATAGCTGGGATTATGATAAATAGACTTCAGAGTGGCATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAATATGAACAATTGGAGGAATTGGCTATAGATCCTAAGTTGCTTTGCAAAGAAAGTAGAATAATCATAACTACAAGGGACGAGCATATTCTAAGAGTGTATGGGGTGGATAAAATTCACAAAGTTCCCCTGTTGAATAGTAATGATGCTTCTGAACTTTTTAGTAGAAGAGCTTTCAAAGGTGAAGAACGAAGCAGCAATTGTGTTGAGTTGATTCCAGAGATACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTTGTTGGCTCTTTCTTGTGTACTCGAGATGCTACTCAGTGGAGAGATGCTTTGGATAGATTAAAGAACAATCCAGACAATAAAATTATGGACGTGCTCCAGATGAGTGTTGATGGACTACAACATGAGGAGAAGGAAATATTTTTGCACATCGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCACATTGGAATTCAAAGAGTCATTGAGAAGTCACTCATTACCATTAAAAACCAAGAGATTCATATGCATGATATGTTACAAGAACTTGGGAAGAAAATCGTCCGGCACCGATTTCTCGGAGACCCAGCATCGTGGAGTAGATTATGGCAATACCATGACTTCTATCAAGTCTTGACAACAGAAACGATTGTTAAATTTTCAAATTTGATGCAAGGAGGTGAAGCTTCCAATTCTTCCATGGATTATAATCACAATCAGAGCCGTAAATATGACGTGTTTATCAGTTTCAGAGGTCCTGACACACGCAACAAATTTGTCGACCATCTTTCTGATCATCTAACTAGAAAAGATATGCCGAGTCTACATGGTGTTTAG 1794 0.3796 MQGAEASNSSMDYSNNQSCRYDVFISFRGPDTRNKFVDHLYNHLTRKGIFAFKDDKRLEKGESLSPQLLRAIKNSRISIVVFSERYAKSKWCLEEMATIAECRIELNQKVFPVFYDIDPSDVRNQNGVYENTLNVDRMSSKHGWNKAVRWVKAMRVLANLVGWDVRNKPESIEIENIVQAIIKTLNHKFSGFTTDLVGIQPRIEELEKLLRLSSKDDDFRVLGIWGMGGVGKTTHAAVLYDRISYQFDACCFINNTGKLYIDGGVVAVQKQILRQALDERNLDSYDTGEIAGIMINRLQSGIKVLLVLDNVDQYEQLEELAIDPKLLCKESRIIITTRDEHILRVYGVDKIHKVPLLNSNDASELFSRRAFKGEERSSNCVELIPEILKYAQNLPLAIKVVGSFLCTRDATQWRDALDRLKNNPDNKIMDVLQMSVDGLQHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGIQRVIEKSLITIKNQEIHMHDMLQELGKKIVRHRFLGDPASWSRLWQYHDFYQVLTTETIVKFSNLMQGGEASNSSMDYNHNQSRKYDVFISFRGPDTRNKFVDHLSDHLTRKDMPSLHGV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06535 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 450 IPR027417 -
Vivi2g06535 597 ProSiteProfiles TIR domain profile. 561 597 IPR000157 GO:0007165
Vivi2g06535 597 SUPERFAMILY Toll/Interleukin receptor TIR domain 553 590 IPR035897 -
Vivi2g06535 597 Gene3D - 356 440 IPR042197 -
Vivi2g06535 597 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Vivi2g06535 597 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Vivi2g06535 597 SMART till_3 20 160 IPR000157 GO:0007165
Vivi2g06535 597 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 538 IPR044974 GO:0006952
Vivi2g06535 597 Gene3D - 1 155 IPR035897 -
Vivi2g06535 597 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Vivi2g06535 597 Pfam NB-ARC domain 209 427 IPR002182 GO:0043531
Vivi2g06535 597 Gene3D - 556 594 IPR035897 -
Vivi2g06535 597 PRINTS Disease resistance protein signature 298 312 - -
Vivi2g06535 597 PRINTS Disease resistance protein signature 391 405 - -
Vivi2g06535 597 PRINTS Disease resistance protein signature 221 236 - -
Vivi2g06535 597 Gene3D - 176 350 IPR027417 -
Vivi2g06535 597 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Vivi2g06535 597 Pfam TIR domain 21 189 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06535 Vivi-Chr2 201370158 201376799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06535 197 523 WRKY Transcription Factor Family AT5G45050 34.650 1.09e-51 190