Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06533 ATGCAAGGAGGTGAAGCTTCCAATTCTTCCATGGATTATAGCCACAATCAGAGCTGTAGATATGATGTGTTTATCAGTTTCAGAGGTCCTGACACACGCAACAACTTTGTCGACCATCTTTATGATCATCTAACTAGGAAGGGCATTTTTGCCTTCAAGGACGATAAAAGGCTTGAAAAAGGAGAATCCCTTTCCCCGCAACTTCTACAAGCAATTAAAAATTCACGGATTTCTATTGTTGTCTTCTCCGAAAGATATGCCGAGTCTACATGGTGTTTGGAAGAGATGGCTACTATTGCTGAATGCCGTATAGAATTCAATCAAAAAGTATTTCCTGTTTTTTATGATGTCGATCCATCTCATGTACGAAAACAAATTGGGGTGTACCAGAACTCTTTTAATTTCGACAGGATGAGTTCCAAACATGGTTGGAATAAGGCTATGAGATGGGTGAATGCTATGAGAGTTTTAGCTAACTTAGTCGGTTGGGATGTCAGGAACAAGCCAGAGTCTACAGAGATTGAAACAATTGTTCAAGCAGTAATAAAGTCTTTGAATCATAAATTCTCAGGGTTTAGCAGCGATCTTGTTGGGATGCAACCTCGCATAGAAGAATTAGAAAAGCTTCTAAGATTGAGCTCAAAGGATGACGACTTCCGAGTATTGGGAATTTGGGGGATGGGTGGAGTAGGGAAGACAACTCATGCTGCTGTTTTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTAATAACATAAGCAAACTTTATATGGATGGTGGTGGTGTTGCTGTACAAAAACAGATTCTTCGTCAAGCTCTAGATGAAAGAAATCTAGACTCATACGATACTGGTGAGATAGCTGGGATTATGATAAATAGACTTCAGGGTGGCATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAGTATGAACAATTGGAGGAATTGGCTATAGATCCTAAGTTGCTTTGCAAAGAAAGTAGAATAATCATAACTACAAGGGACGAGCATATTCTAAGAGTGTATGGGGTGGATAAAATTCACAAAGTTCCGCTGTTGAATAGTAATGATGCTTCTGAACTTTTTAGTAGAAGAGCCTTCAGAGGTGAAGAACGAAGCAACAATTGTATTGAATTGATTCCAGAGATACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCAACTCAGTGGAGAGATGCTTTGAATAGATTGAAGAACAATCCAGACAATAAAATTATGGACGTGCTCCAGATGAGTGTTGATGGACTAGAACATGAGGAGAAGGAAATATTTCTCCACATTGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCACATTGGTATTCAGAGAGTCATTGAGAAGTCACTCATTACGATTAAAAACCAAGAAATTCATATGCATGATATGTTACAAGAACTTGGGAAGAAAATCGTCCGGCACCGATTTCTCGGAGACCCAACATCATGGAGTAGATTATGGCAATACCATGATTTCTATCAAGTCTTGACAACAGAAACGGGAACAAACAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAAATGCAGGGCTGAAGGATTTTTAAATATGAGCAACCTTGCACTTCTCATATTGTATCATAATAATTTTTCAGGAAGTTTGGATTTTCTTTCCAACAACTTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATATTGTGGAATTGAATATGCCTCATAGTAACATTCAGTGGCTGTGGGAAGGTCGCAAGGAACTACCTAATTTGAAAAGGATGGATTTGAGCAACTCCAAAAATCTTATAGAGACACCAAAGTTTTTTTGGACCCCAAAACTGGAGCGGCTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGCCAACCTTGATTTTGGTAGTGTATCAAGATTAAATTCTCTGAGAGTTCTGCGCCTTTCCGGTTGTACGAAACTTGAAAAGACGCCTGATTTAACTGGGGCATCAGTCCTTGAATACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAATCCATTGGGGATTTGACAAAGCTTAAATTCTTGAGTTTGAGAAACTGCACAAATCTGGTTGAAATGCCTGATTGGATTAAGAGGATGGCGTCCCTTGTAACTCTAGATTTTTGCGGTTGCTCGAGTCTTACAATTCTACCCTTGAAATGGACTCATACTGATCATATGAGTTCTTTGATTTTTCTAGATTTAAGCTTTTGCAATCTTCATGAAGTACCAGATACTATTGGAACGTTACATACGTTAGAAAGACTAAATCTACAAGGAAACAAGTTTCGTTCACTACCTGATGATTTCTTTGGTCTTGATAACCTAGCATATGTAAACTTATCTCATTGCCATGAGCTTGAAAGTAATGAGCTCCTATTTTCACAAAGTGTTTCACAAAGTGCTTCAAAAAGTGCTTCTTCTGGAGGAAGATATTTTAGCATAGTAGCGGGATCTCGTGATCATAGGTCAGGATTTTATATATTTGACTGCCCTAAGTTCATTGTTAAATCCAAATACCAATCCATAGAATGTTCATGGTTACAAAGACTACTTCAGGGTCCCCATCACTTCCGGGGTGGCTTTGACATTGTTGTTCCTTGGGATTGGGAAAACATTTATTTTCCGTCAAGTTGTTGCATTCCAAAATGGTTCAATTACACATTTGATAGTGATTCAATAATAAGGATAGTAGAGTTTGGTGAGTTTGATAAGAAGTTTGGCTTTGTCTTCTGTGTGGCATTTGAGGTAAACAATTGTCCTGCAAATTCTGGTTCGGCACAGGATTCATTTTCCTCAGCACTCCCACATCCCTTATATCTTTCTTTTGAAAGTGAACACACAGAGGAATGCTTTGTTTTGCCGCTCAGTTTGGAACTGCACAAAATTGATGGCTCCAGACATCTTTGGCTAATCTATATCTCTCAAGAGCACTGCCATTTTTTAAAAACTGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGTCAATAAAGAAATGGGGATTACGTTCGTTAATCAAGGATCAATTATCATATCATGTCCCTAGCTTCTGGGAACACTTACCAGACACTGATGCGCCCCAACTTTTCTTTGATCATGTACAAAAAACCAGCATGAAGTCTGGAACTAAAATCCAACTTCCTTACAATTGGTTGTTTACTGAAGAGGAAGTAGTTGAGAATTCTGGAGCAAAGTCAAAAGAAACTGCTCTTTCTAATCTGGGCCTTTAG 3447 0.3821 MQGGEASNSSMDYSHNQSCRYDVFISFRGPDTRNNFVDHLYDHLTRKGIFAFKDDKRLEKGESLSPQLLQAIKNSRISIVVFSERYAESTWCLEEMATIAECRIEFNQKVFPVFYDVDPSHVRKQIGVYQNSFNFDRMSSKHGWNKAMRWVNAMRVLANLVGWDVRNKPESTEIETIVQAVIKSLNHKFSGFSSDLVGMQPRIEELEKLLRLSSKDDDFRVLGIWGMGGVGKTTHAAVLYDRISYQFDACCFINNISKLYMDGGGVAVQKQILRQALDERNLDSYDTGEIAGIMINRLQGGIKVLLVLDNVDQYEQLEELAIDPKLLCKESRIIITTRDEHILRVYGVDKIHKVPLLNSNDASELFSRRAFRGEERSNNCIELIPEILKYAQNLPLAIKVVGSFLCTRDATQWRDALNRLKNNPDNKIMDVLQMSVDGLEHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGIQRVIEKSLITIKNQEIHMHDMLQELGKKIVRHRFLGDPTSWSRLWQYHDFYQVLTTETGTNNVKAIVLDQKESFSKCRAEGFLNMSNLALLILYHNNFSGSLDFLSNNLRYLLWHGYPFTSLPSNFEPYYIVELNMPHSNIQWLWEGRKELPNLKRMDLSNSKNLIETPKFFWTPKLERLDFTGCTNLIQVHPSIGHLTELVFLCLQNCSSLANLDFGSVSRLNSLRVLRLSGCTKLEKTPDLTGASVLEYLDMDECTTLSKVHESIGDLTKLKFLSLRNCTNLVEMPDWIKRMASLVTLDFCGCSSLTILPLKWTHTDHMSSLIFLDLSFCNLHEVPDTIGTLHTLERLNLQGNKFRSLPDDFFGLDNLAYVNLSHCHELESNELLFSQSVSQSASKSASSGGRYFSIVAGSRDHRSGFYIFDCPKFIVKSKYQSIECSWLQRLLQGPHHFRGGFDIVVPWDWENIYFPSSCCIPKWFNYTFDSDSIIRIVEFGEFDKKFGFVFCVAFEVNNCPANSGSAQDSFSSALPHPLYLSFESEHTEECFVLPLSLELHKIDGSRHLWLIYISQEHCHFLKTGAHITFKACPGLSIKKWGLRSLIKDQLSYHVPSFWEHLPDTDAPQLFFDHVQKTSMKSGTKIQLPYNWLFTEEEVVENSGAKSKETALSNLGL 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06533 1148 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 718 IPR044974 GO:0006952
Vivi2g06533 1148 Pfam TIR domain 21 188 IPR000157 GO:0007165
Vivi2g06533 1148 Pfam Leucine Rich Repeat 609 624 IPR011713 -
Vivi2g06533 1148 Gene3D - 187 350 IPR027417 -
Vivi2g06533 1148 Gene3D - 356 440 IPR042197 -
Vivi2g06533 1148 SMART LRR_typ_2 821 844 IPR003591 -
Vivi2g06533 1148 SMART LRR_typ_2 798 819 IPR003591 -
Vivi2g06533 1148 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Vivi2g06533 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 450 IPR027417 -
Vivi2g06533 1148 Gene3D Ribonuclease Inhibitor 726 872 IPR032675 -
Vivi2g06533 1148 SMART till_3 20 160 IPR000157 GO:0007165
Vivi2g06533 1148 SUPERFAMILY L domain-like 495 860 - -
Vivi2g06533 1148 Pfam Leucine rich repeat 804 856 IPR001611 GO:0005515
Vivi2g06533 1148 PRINTS Disease resistance protein signature 221 236 - -
Vivi2g06533 1148 PRINTS Disease resistance protein signature 391 405 - -
Vivi2g06533 1148 PRINTS Disease resistance protein signature 298 312 - -
Vivi2g06533 1148 PRINTS Disease resistance protein signature 626 642 - -
Vivi2g06533 1148 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Vivi2g06533 1148 Gene3D Ribonuclease Inhibitor 538 724 IPR032675 -
Vivi2g06533 1148 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 163 IPR035897 -
Vivi2g06533 1148 Pfam NB-ARC domain 209 427 IPR002182 GO:0043531
Vivi2g06533 1148 Gene3D - 14 186 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06533 Vivi-Chr2 201357503 201369200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06533 21 827 WRKY Transcription Factor Family AT4G12020 30.061 2.27e-90 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06533 - - var:108332841 1310.82