Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06530 ATGAGATTCAAACATGATCAGAATAAGGTTGGGAGGTGGAGTAATGCTATGAAAGTTTTAGCTAACTTAGTCGGATGGGATATCAGGAACAAAGACAAACCCGAACCTGCGAGATTCAGAGGCATACTTGGAATAGGAATCTGCCTGTTTCGGACTGTGAAAAGCTTCAACTTTTGGCCAGAGTCTACAGAGATTGAAACAATTGTTCAAGCAGTAATAAAGTCTTTGAATCATAAATTCTCAGGGTTTAGCAGCGATCTTGTTGGGATGCAACCTCGCATAGAAGAATTAGAAAAGCTTCTAAGATTGAGCTCAAAGGATGACGACTTCCGAGTATTGGGAATTTGGGGGATGGGTGGAGTAGGGAAGACAACTCATGCTGCTGTTTTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTAATAACATAAGCAAACTTTATATGGATGGTGGTGGTGTTGCTGTACAAAAACAGATTCTTCGTCAAGCTCTAGATGAAAGAAATCTAGACTCATACGATACTGGTGAGATAGCTGGGATTATGATAAATAGACTTCAGGGTGGCATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAGTATGAACAATTGGAGGAATTGGCTATAGATCCTAAGTTGCTTTGCAAAGAAAGTAGAATAATCATAACTACAAGGGACGAGCATATTCTAAGAGTGTATGGGGTGGATAAAATTCACAAAGTTCCGCTGTTGAATAGTAATGATGCTTCTGAACTTTTTAGTAGAAGAGCCTTCAGAGGTGAAGAACGAAGCAACAATTGTATTGAATTGATTCCAGAGATACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCAACTCAGTGGAGAGATGCTTTGAATAGATTGAAGAACAATCCAGACAATAAAATTATGGACGTGCTCCAGATGAGTGTTGATGGACTAGAACATGAGGAGAAGGAAATATTTCTCCACATTGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCACATTGGTATTCAGAGAGTCATTGAGAAGTCACTCATTACGATTAAAAACCAAGAAATTCATATGCATGATATGTTACAAGAACTTGGGAAGAAAATCGTCCGGCACCGATTTCTCGGAGACCCAACATCATGGAGTAGATTATGGCAATACCATGATTTCTATCAAGTCTTGACAACAGAAACGGGAACAAACAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAAATGCAGGGCTGAAGGATTTTTAAATATGAGCAACCTTGCACTTCTCATATTGTATCATAATAATTTTTCAGGAAGTTTGGATTTTCTTTCCAACAACTTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATATTGTGGAATTGAATATGCCTCATAGTAACATTCAGTGGCTGTGGGAAGGTCGCAAGGAACTACCTAATTTGAAAAGGATGGATTTGAGCAACTCCAAAAATCTTATAGAGACACCAAAGTTTTTTTGGACCCCAAAACTGGAGCGGCTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGCCAACCTTGATTTTGGTAGTGTATCAAGATTAAATTCTCTGAGAGTTCTGCGCCTTTCCGGTTGTACGAAACTTGAAAAGACGCCTGATTTAACTGGGGCATCAGTCCTTGAATACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAATCCATTGGGGATTTGACAAAGCTTAAATTCTTGAGTTTGAGAAACTGCACAAATCTGGTTGAAATGCCTGATTGGATTAAGAGGATGGCGTCCCTTGTAACTCTAGATTTTTGCGGTTGCTCGAGTCTTACAATTCTACCCTTGAAATGGACTCATACTGATCATATGAGTTCTTTGATTTTTCTAGATTTAAGCTTTTGCAATCTTCATGAAGTACCAGATACTATTGGAACGTTACATACGTTAGAAAGACTAAATCTACAAGGAAACAAGTTTCGTTCACTACCTGATGATTTCTTTGGTCTTGATAACCTAGCATATGTAAACTTATCTCATTGCCATGAGCTTGAAAGTAATGAGCTCCTATTTTCACAAAGTGTTTCACAAAGTGCTTCAAAAAGTGCTTCTTCTGGAGGAAGATATTTTAGCATAGTAGCGGGATCTCGTGATCATAGGTCAGGATTTTATATATTTGACTGCCCTAAGTTCATTGTTAAATCCAAATACCAATCCATAGAATGTTCATGGTTACAAAGACTACTTCAGGGTCCCCATCACTTCCGGGGTGGCTTTGACATTGTTGTTCCTTGGGATTGGGAAAACATTTATTTTCCGTCAAGTTGTTGCATTCCAAAATGGTTCAATTACACATTTGATAGTGATTCAATAATAAGGATAGTAGAGTTTGGTGAGTTTGATAAGAAGTTTGGCTTTGTCTTCTGTGTGGCATTTGAGGTAAACAATTGTCCTGCAAATTCTGGTTCGGCACAGGATTCATTTTCCTCAGCACTCCCACATCCCTTATATCTTTCTTTTGAAAGTGAACACACAGAGGAATGCTTTGTTTTGCCGCTCAGTTTGGAACTGCACAAAATTGATGGCTCCAGACATCTTTGGCTAATCTATATCTCTCAAGAGCACTGCCATTTTTTAAAAACTGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGTCAATAAAGAAATGGGGATTACGTTCGTTAATCAAGGATCAATTATCATATCATGTCCCTAGCTTCTGGGAACACTTACCAGACACTGATGCGCCCCAACTTTTCTTTGATCATGTACAAAAAACCAGCATGAAGTCTGGAACTAAAATCCAACTTCCTTACAATTGGTTGTTTACTGAAGAGGAAGTAGTTGAGAATTCTGGAGCAAAGTCAAAAGAAACTGCTCTTTCTAATCTGGGCCTTTAG 3120 0.3814 MRFKHDQNKVGRWSNAMKVLANLVGWDIRNKDKPEPARFRGILGIGICLFRTVKSFNFWPESTEIETIVQAVIKSLNHKFSGFSSDLVGMQPRIEELEKLLRLSSKDDDFRVLGIWGMGGVGKTTHAAVLYDRISYQFDACCFINNISKLYMDGGGVAVQKQILRQALDERNLDSYDTGEIAGIMINRLQGGIKVLLVLDNVDQYEQLEELAIDPKLLCKESRIIITTRDEHILRVYGVDKIHKVPLLNSNDASELFSRRAFRGEERSNNCIELIPEILKYAQNLPLAIKVVGSFLCTRDATQWRDALNRLKNNPDNKIMDVLQMSVDGLEHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGIQRVIEKSLITIKNQEIHMHDMLQELGKKIVRHRFLGDPTSWSRLWQYHDFYQVLTTETGTNNVKAIVLDQKESFSKCRAEGFLNMSNLALLILYHNNFSGSLDFLSNNLRYLLWHGYPFTSLPSNFEPYYIVELNMPHSNIQWLWEGRKELPNLKRMDLSNSKNLIETPKFFWTPKLERLDFTGCTNLIQVHPSIGHLTELVFLCLQNCSSLANLDFGSVSRLNSLRVLRLSGCTKLEKTPDLTGASVLEYLDMDECTTLSKVHESIGDLTKLKFLSLRNCTNLVEMPDWIKRMASLVTLDFCGCSSLTILPLKWTHTDHMSSLIFLDLSFCNLHEVPDTIGTLHTLERLNLQGNKFRSLPDDFFGLDNLAYVNLSHCHELESNELLFSQSVSQSASKSASSGGRYFSIVAGSRDHRSGFYIFDCPKFIVKSKYQSIECSWLQRLLQGPHHFRGGFDIVVPWDWENIYFPSSCCIPKWFNYTFDSDSIIRIVEFGEFDKKFGFVFCVAFEVNNCPANSGSAQDSFSSALPHPLYLSFESEHTEECFVLPLSLELHKIDGSRHLWLIYISQEHCHFLKTGAHITFKACPGLSIKKWGLRSLIKDQLSYHVPSFWEHLPDTDAPQLFFDHVQKTSMKSGTKIQLPYNWLFTEEEVVENSGAKSKETALSNLGL 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06530 1039 SMART LRR_typ_2 689 710 IPR003591 -
Vivi2g06530 1039 SMART LRR_typ_2 712 735 IPR003591 -
Vivi2g06530 1039 Pfam Leucine rich repeat 695 747 IPR001611 GO:0005515
Vivi2g06530 1039 Gene3D - 74 241 IPR027417 -
Vivi2g06530 1039 Gene3D Ribonuclease Inhibitor 429 615 IPR032675 -
Vivi2g06530 1039 SUPERFAMILY L domain-like 386 751 - -
Vivi2g06530 1039 Gene3D - 247 331 IPR042197 -
Vivi2g06530 1039 PRINTS Disease resistance protein signature 189 203 - -
Vivi2g06530 1039 PRINTS Disease resistance protein signature 112 127 - -
Vivi2g06530 1039 PRINTS Disease resistance protein signature 517 533 - -
Vivi2g06530 1039 PRINTS Disease resistance protein signature 282 296 - -
Vivi2g06530 1039 Gene3D Ribonuclease Inhibitor 617 763 IPR032675 -
Vivi2g06530 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 341 IPR027417 -
Vivi2g06530 1039 Pfam Leucine Rich Repeat 500 515 IPR011713 -
Vivi2g06530 1039 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 607 IPR044974 GO:0006952
Vivi2g06530 1039 Pfam NB-ARC domain 100 318 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06530 Vivi-Chr2 201357503 201370184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06530 88 679 WRKY Transcription Factor Family AT5G45050 31.761 1.80e-83 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06530 - - var:108332841 1121.3