Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06527 ATGGGATATCAGGAACAAAGACAAACCCGAACCTGCGAGATTCAGAGGCATACTTGGAATAGGAATCTGCCTGTTTCGGACTGTGAAAAGCTTCAACTTTTGCAAGCTTGTTTGTCTTTTTCCAATTTGATGCAAGGAGGTGAAGCTTCCAATTCTTCCATGGATTATAGCCACAATCAGAGCTGTAGATATGATGTGTTTATCAGTTTCAGAGGTCCTGACACACGCAACAACTTTGTCGACCATCTTTATGATCATCTAACTAGGAAGGGCATTTTTGCCTTCAAGGACGATAAAAGGCTTGAAAAAGGAGAATCCCTTTCCCCGCAACTTCTACAAGCAATTAAAAATTCACGGATTTCTATTGTTGTCTTCTCCGAAAGATATGCCGAGTCTACATGGTGTTTGGAAGAGATGGCTACTATTGCTGAATGCCGTATAGAATTCAATCAAAAAGTATTTCCTGTTTTTTATGATGTCGATCCATCTCATGTACGAAAACAAATTGGGGTGTACCAGAACTCTTTTAATTTCGACAGGATGAGTTCCAAACATGGTTGGAATAAGGCTATGAGATGGGTGAATGCTATGAGAGTTTTAGCTAACTTAGTCGGTTGGGATGTCAGGAACAAGCCAGAGTCTACAGAGATTGAAACAATTGTTCAAGCAGTAATAAAGTCTTTGAATCATAAATTCTCAGGGTTTAGCAGCGATCTTGTTGGGATGCAACCTCGCATAGAAGAATTAGAAAAGCTTCTAAGATTGAGCTCAAAGGATGACGACTTCCGAGTATTGGGAATTTGGGGGATGGGTGGAGTAGGGAAGACAACTCATGCTGCTGTTTTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTAATAACATAAGCAAACTTTATATGGATGGTGGTGGTGTTGCTGTACAAAAACAGATTCTTCGTCAAGCTCTAGATGAAAGAAATCTAGACTCATACGATACTGGTGAGATAGCTGGGATTATGATAAATAGACTTCAGGGTGGCATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAGTATGAACAATTGGAGGAATTGGCTATAGATCCTAAGTTGCTTTGCAAAGAAAGTAGAATAATCATAACTACAAGGGACGAGCATATTCTAAGAGTGTATGGGGTGGATAAAATTCACAAAGTTCCGCTGTTGAATAGTAATGATGCTTCTGAACTTTTTAGTAGAAGAGCCTTCAGAGGTGAAGAACGAAGCAACAATTGTATTGAATTGATTCCAGAGATACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCAACTCAGTGGAGAGATGCTTTGAATAGATTGAAGAACAATCCAGACAATAAAATTATGGACGTGCTCCAGATGAGTGTTGATGGACTAGAACATGAGGAGAAGGAAATATTTCTCCACATTGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCACATTGGTATTCAGAGAGTCATTGAGAAGTCACTCATTACGATTAAAAACCAAGAAATTCATATGCATGATATGTTACAAGAACTTGGGAAGAAAATCGTCCGGCACCGATTTCTCGGAGACCCAACATCATGGAGTAGATTATGGCAATACCATGATTTCTATCAAGTCTTGACAACAGAAACGGGAACAAACAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAAATGCAGGGCTGAAGGATTTTTAAATATGAGCAACCTTGCACTTCTCATATTGTATCATAATAATTTTTCAGGAAGTTTGGATTTTCTTTCCAACAACTTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATATTGTGGAATTGAATATGCCTCATAGTAACATTCAGTGGCTGTGGGAAGGTCGCAAGGAACTACCTAATTTGAAAAGGATGGATTTGAGCAACTCCAAAAATCTTATAGAGACACCAAAGTTTTTTTGGACCCCAAAACTGGAGCGGCTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGCCAACCTTGATTTTGGTAGTGTATCAAGATTAAATTCTCTGAGAGTTCTGCGCCTTTCCGGTTGTACGAAACTTGAAAAGACGCCTGATTTAACTGGGGCATCAGTCCTTGAATACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAATCCATTGGGGATTTGACAAAGCTTAAATTCTTGAGTTTGAGAAACTGCACAAATCTGGTTGAAATGCCTGATTGGATTAAGAGGATGGCGTCCCTTGTAACTCTAGATTTTTGCGGTTGCTCGAGTCTTACAATTCTACCCTTGAAATGGACTCATACTGATCATATGAGTTCTTTGATTTTTCTAGATTTAAGCTTTTGCAATCTTCATGAAGTACCAGATACTATTGGAACGTTACATACGTTAGAAAGACTAAATCTACAAGGAAACAAGTTTCGTTCACTACCTGATGATTTCTTTGGTCTTGATAACCTAGCATATGTAAACTTATCTCATTGCCATGAGCTTGAAAGTAATGAGCTCCTATTTTCACAAAGTGTTTCACAAAGTGCTTCAAAAAGTGCTTCTTCTGGAGGAAGATATTTTAGCATAGTAGCGGGATCTCGTGATCATAGGTCAGGATTTTATATATTTGACTGCCCTAAGTTCATTGTTAAATCCAAATACCAATCCATAGAATGTTCATGGTTACAAAGACTACTTCAGGGTCCCCATCACTTCCGGGGTGGCTTTGACATTGTTGTTCCTTGGGATTGGGAAAACATTTATTTTCCGTCAAGTTGTTGCATTCCAAAATGGTTCAATTACACATTTGATAGTGATTCAATAATAAGGATAGTAGAGTTTGGTGAGTTTGATAAGAAGTTTGGCTTTGTCTTCTGTGTGGCATTTGAGGTAAACAATTGTCCTGCAAATTCTGGTTCGGCACAGGATTCATTTTCCTCAGCACTCCCACATCCCTTATATCTTTCTTTTGAAAGTGAACACACAGAGGAATGCTTTGTTTTGCCGCTCAGTTTGGAACTGCACAAAATTGATGGCTCCAGACATCTTTGGCTAATCTATATCTCTCAAGAGCACTGCCATTTTTTAAAAACTGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGTCAATAAAGAAATGGGGATTACGTTCGTTAATCAAGGATCAATTATCATATCATGTCCCTAGCTTCTGGGAACACTTACCAGACACTGATGCGCCCCAACTTTTCTTTGATCATGTACAAAAAACCAGCATGAAGTCTGGAACTAAAATCCAACTTCCTTACAATTGGTTGTTTACTGAAGAGGAAGTAGTTGAGAATTCTGGAGCAAAGTCAAAAGAAACTGCTCTTTCTAATCTGGGCCTTTAG 3576 0.3834 MGYQEQRQTRTCEIQRHTWNRNLPVSDCEKLQLLQACLSFSNLMQGGEASNSSMDYSHNQSCRYDVFISFRGPDTRNNFVDHLYDHLTRKGIFAFKDDKRLEKGESLSPQLLQAIKNSRISIVVFSERYAESTWCLEEMATIAECRIEFNQKVFPVFYDVDPSHVRKQIGVYQNSFNFDRMSSKHGWNKAMRWVNAMRVLANLVGWDVRNKPESTEIETIVQAVIKSLNHKFSGFSSDLVGMQPRIEELEKLLRLSSKDDDFRVLGIWGMGGVGKTTHAAVLYDRISYQFDACCFINNISKLYMDGGGVAVQKQILRQALDERNLDSYDTGEIAGIMINRLQGGIKVLLVLDNVDQYEQLEELAIDPKLLCKESRIIITTRDEHILRVYGVDKIHKVPLLNSNDASELFSRRAFRGEERSNNCIELIPEILKYAQNLPLAIKVVGSFLCTRDATQWRDALNRLKNNPDNKIMDVLQMSVDGLEHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGIQRVIEKSLITIKNQEIHMHDMLQELGKKIVRHRFLGDPTSWSRLWQYHDFYQVLTTETGTNNVKAIVLDQKESFSKCRAEGFLNMSNLALLILYHNNFSGSLDFLSNNLRYLLWHGYPFTSLPSNFEPYYIVELNMPHSNIQWLWEGRKELPNLKRMDLSNSKNLIETPKFFWTPKLERLDFTGCTNLIQVHPSIGHLTELVFLCLQNCSSLANLDFGSVSRLNSLRVLRLSGCTKLEKTPDLTGASVLEYLDMDECTTLSKVHESIGDLTKLKFLSLRNCTNLVEMPDWIKRMASLVTLDFCGCSSLTILPLKWTHTDHMSSLIFLDLSFCNLHEVPDTIGTLHTLERLNLQGNKFRSLPDDFFGLDNLAYVNLSHCHELESNELLFSQSVSQSASKSASSGGRYFSIVAGSRDHRSGFYIFDCPKFIVKSKYQSIECSWLQRLLQGPHHFRGGFDIVVPWDWENIYFPSSCCIPKWFNYTFDSDSIIRIVEFGEFDKKFGFVFCVAFEVNNCPANSGSAQDSFSSALPHPLYLSFESEHTEECFVLPLSLELHKIDGSRHLWLIYISQEHCHFLKTGAHITFKACPGLSIKKWGLRSLIKDQLSYHVPSFWEHLPDTDAPQLFFDHVQKTSMKSGTKIQLPYNWLFTEEEVVENSGAKSKETALSNLGL 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06527 1191 Pfam Leucine Rich Repeat 652 667 IPR011713 -
Vivi2g06527 1191 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 206 IPR035897 -
Vivi2g06527 1191 SMART till_3 63 203 IPR000157 GO:0007165
Vivi2g06527 1191 Gene3D - 230 393 IPR027417 -
Vivi2g06527 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 493 IPR027417 -
Vivi2g06527 1191 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 64 758 IPR044974 GO:0006952
Vivi2g06527 1191 SMART LRR_typ_2 864 887 IPR003591 -
Vivi2g06527 1191 SMART LRR_typ_2 841 862 IPR003591 -
Vivi2g06527 1191 Gene3D Ribonuclease Inhibitor 769 915 IPR032675 -
Vivi2g06527 1191 PRINTS Disease resistance protein signature 341 355 - -
Vivi2g06527 1191 PRINTS Disease resistance protein signature 669 685 - -
Vivi2g06527 1191 PRINTS Disease resistance protein signature 264 279 - -
Vivi2g06527 1191 PRINTS Disease resistance protein signature 434 448 - -
Vivi2g06527 1191 ProSiteProfiles TIR domain profile. 62 228 IPR000157 GO:0007165
Vivi2g06527 1191 Gene3D Ribonuclease Inhibitor 581 767 IPR032675 -
Vivi2g06527 1191 Pfam Leucine rich repeat 847 899 IPR001611 GO:0005515
Vivi2g06527 1191 SUPERFAMILY L domain-like 538 903 - -
Vivi2g06527 1191 Pfam NB-ARC domain 252 470 IPR002182 GO:0043531
Vivi2g06527 1191 FunFam Disease resistance protein (TIR-NBS-LRR class) 60 230 - -
Vivi2g06527 1191 Gene3D - 399 483 IPR042197 -
Vivi2g06527 1191 Gene3D - 57 229 IPR035897 -
Vivi2g06527 1191 Pfam TIR domain 64 231 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06527 Vivi-Chr2 201357503 201370204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06527 64 870 WRKY Transcription Factor Family AT4G12020 30.061 3.18e-90 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06527 - - var:108332841 1310.82