Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06526 ATGGGATATCAGGAACAACAAGCTTGTTTGTCTTTTTCCAATTTGATGCAAGGAGGTGAAGCTTCCAATTCTTCCATGGATTATAGCCACAATCAGAGCTGTAGATATGATGTGTTTATCAGTTTCAGAGGTCCTGACACACGCAACAACTTTGTCGACCATCTTTATGATCATCTAACTAGGAAGGGCATTTTTGCCTTCAAGGACGATAAAAGGCTTGAAAAAGGAGAATCCCTTTCCCCGCAACTTCTACAAGCAATTAAAAATTCACGGATTTCTATTGTTGTCTTCTCCGAAAGATATGCCGAGTCTACATGGTGTTTGGAAGAGATGGCTACTATTGCTGAATGCCGTATAGAATTCAATCAAAAAGTATTTCCTGTTTTTTATGATGTCGATCCATCTCATGTACGAAAACAAATTGGGGTGTACCAGAACTCTTTTAATTTCGACAGGATGAGTTCCAAACATGGTTGGAATAAGGCTATGAGATGGGTGAATGCTATGAGAGTTTTAGCTAACTTAGTCGGTTGGGATGTCAGGAACAAGCCAGAGTCTACAGAGATTGAAACAATTGTTCAAGCAGTAATAAAGTCTTTGAATCATAAATTCTCAGGGTTTAGCAGCGATCTTGTTGGGATGCAACCTCGCATAGAAGAATTAGAAAAGCTTCTAAGATTGAGCTCAAAGGATGACGACTTCCGAGTATTGGGAATTTGGGGGATGGGTGGAGTAGGGAAGACAACTCATGCTGCTGTTTTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTAATAACATAAGCAAACTTTATATGGATGGTGGTGGTGTTGCTGTACAAAAACAGATTCTTCGTCAAGCTCTAGATGAAAGAAATCTAGACTCATACGATACTGGTGAGATAGCTGGGATTATGATAAATAGACTTCAGGGTGGCATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAGTATGAACAATTGGAGGAATTGGCTATAGATCCTAAGTTGCTTTGCAAAGAAAGTAGAATAATCATAACTACAAGGGACGAGCATATTCTAAGAGTGTATGGGGTGGATAAAATTCACAAAGTTCCGCTGTTGAATAGTAATGATGCTTCTGAACTTTTTAGTAGAAGAGCCTTCAGAGGTGAAGAACGAAGCAACAATTGTATTGAATTGATTCCAGAGATACTAAAATATGCTCAAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCAACTCAGTGGAGAGATGCTTTGAATAGATTGAAGAACAATCCAGACAATAAAATTATGGACGTGCTCCAGATGAGTGTTGATGGACTAGAACATGAGGAGAAGGAAATATTTCTCCACATTGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCACATTGGTATTCAGAGAGTCATTGAGAAGTCACTCATTACGATTAAAAACCAAGAAATTCATATGCATGATATGTTACAAGAACTTGGGAAGAAAATCGTCCGGCACCGATTTCTCGGAGACCCAACATCATGGAGTAGATTATGGCAATACCATGATTTCTATCAAGTCTTGACAACAGAAACGGGAACAAACAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAAATGCAGGGCTGAAGGATTTTTAAATATGAGCAACCTTGCACTTCTCATATTGTATCATAATAATTTTTCAGGAAGTTTGGATTTTCTTTCCAACAACTTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATATTGTGGAATTGAATATGCCTCATAGTAACATTCAGTGGCTGTGGGAAGGTCGCAAGGAACTACCTAATTTGAAAAGGATGGATTTGAGCAACTCCAAAAATCTTATAGAGACACCAAAGTTTTTTTGGACCCCAAAACTGGAGCGGCTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGCCAACCTTGATTTTGGTAGTGTATCAAGATTAAATTCTCTGAGAGTTCTGCGCCTTTCCGGTTGTACGAAACTTGAAAAGACGCCTGATTTAACTGGGGCATCAGTCCTTGAATACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAATCCATTGGGGATTTGACAAAGCTTAAATTCTTGAGTTTGAGAAACTGCACAAATCTGGTTGAAATGCCTGATTGGATTAAGAGGATGGCGTCCCTTGTAACTCTAGATTTTTGCGGTTGCTCGAGTCTTACAATTCTACCCTTGAAATGGACTCATACTGATCATATGAGTTCTTTGATTTTTCTAGATTTAAGCTTTTGCAATCTTCATGAAGTACCAGATACTATTGGAACGTTACATACGTTAGAAAGACTAAATCTACAAGGAAACAAGTTTCGTTCACTACCTGATGATTTCTTTGGTCTTGATAACCTAGCATATGTAAACTTATCTCATTGCCATGAGCTTGAAAGTAATGAGCTCCTATTTTCACAAAGTGTTTCACAAAGTGCTTCAAAAAGTGCTTCTTCTGGAGGAAGATATTTTAGCATAGTAGCGGGATCTCGTGATCATAGGTCAGGATTTTATATATTTGACTGCCCTAAGTTCATTGTTAAATCCAAATACCAATCCATAGAATGTTCATGGTTACAAAGACTACTTCAGGGTCCCCATCACTTCCGGGGTGGCTTTGACATTGTTGTTCCTTGGGATTGGGAAAACATTTATTTTCCGTCAAGTTGTTGCATTCCAAAATGGTTCAATTACACATTTGATAGTGATTCAATAATAAGGATAGTAGAGTTTGGTGAGTTTGATAAGAAGTTTGGCTTTGTCTTCTGTGTGGCATTTGAGGTAAACAATTGTCCTGCAAATTCTGGTTCGGCACAGGATTCATTTTCCTCAGCACTCCCACATCCCTTATATCTTTCTTTTGAAAGTGAACACACAGAGGAATGCTTTGTTTTGCCGCTCAGTTTGGAACTGCACAAAATTGATGGCTCCAGACATCTTTGGCTAATCTATATCTCTCAAGAGCACTGCCATTTTTTAAAAACTGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGTCAATAAAGAAATGGGGATTACGTTCGTTAATCAAGGATCAATTATCATATCATGTCCCTAGCTTCTGGGAACACTTACCAGACACTGATGCGCCCCAACTTTTCTTTGATCATGTACAAAAAACCAGCATGAAGTCTGGAACTAAAATCCAACTTCCTTACAATTGGTTGTTTACTGAAGAGGAAGTAGTTGAGAATTCTGGAGCAAAGTCAAAAGAAACTGCTCTTTCTAATCTGGGCCTTTAG 3492 0.3817 MGYQEQQACLSFSNLMQGGEASNSSMDYSHNQSCRYDVFISFRGPDTRNNFVDHLYDHLTRKGIFAFKDDKRLEKGESLSPQLLQAIKNSRISIVVFSERYAESTWCLEEMATIAECRIEFNQKVFPVFYDVDPSHVRKQIGVYQNSFNFDRMSSKHGWNKAMRWVNAMRVLANLVGWDVRNKPESTEIETIVQAVIKSLNHKFSGFSSDLVGMQPRIEELEKLLRLSSKDDDFRVLGIWGMGGVGKTTHAAVLYDRISYQFDACCFINNISKLYMDGGGVAVQKQILRQALDERNLDSYDTGEIAGIMINRLQGGIKVLLVLDNVDQYEQLEELAIDPKLLCKESRIIITTRDEHILRVYGVDKIHKVPLLNSNDASELFSRRAFRGEERSNNCIELIPEILKYAQNLPLAIKVVGSFLCTRDATQWRDALNRLKNNPDNKIMDVLQMSVDGLEHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGIQRVIEKSLITIKNQEIHMHDMLQELGKKIVRHRFLGDPTSWSRLWQYHDFYQVLTTETGTNNVKAIVLDQKESFSKCRAEGFLNMSNLALLILYHNNFSGSLDFLSNNLRYLLWHGYPFTSLPSNFEPYYIVELNMPHSNIQWLWEGRKELPNLKRMDLSNSKNLIETPKFFWTPKLERLDFTGCTNLIQVHPSIGHLTELVFLCLQNCSSLANLDFGSVSRLNSLRVLRLSGCTKLEKTPDLTGASVLEYLDMDECTTLSKVHESIGDLTKLKFLSLRNCTNLVEMPDWIKRMASLVTLDFCGCSSLTILPLKWTHTDHMSSLIFLDLSFCNLHEVPDTIGTLHTLERLNLQGNKFRSLPDDFFGLDNLAYVNLSHCHELESNELLFSQSVSQSASKSASSGGRYFSIVAGSRDHRSGFYIFDCPKFIVKSKYQSIECSWLQRLLQGPHHFRGGFDIVVPWDWENIYFPSSCCIPKWFNYTFDSDSIIRIVEFGEFDKKFGFVFCVAFEVNNCPANSGSAQDSFSSALPHPLYLSFESEHTEECFVLPLSLELHKIDGSRHLWLIYISQEHCHFLKTGAHITFKACPGLSIKKWGLRSLIKDQLSYHVPSFWEHLPDTDAPQLFFDHVQKTSMKSGTKIQLPYNWLFTEEEVVENSGAKSKETALSNLGL 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06526 1163 FunFam Disease resistance protein (TIR-NBS-LRR class) 32 202 - -
Vivi2g06526 1163 ProSiteProfiles TIR domain profile. 34 200 IPR000157 GO:0007165
Vivi2g06526 1163 Pfam Leucine rich repeat 819 871 IPR001611 GO:0005515
Vivi2g06526 1163 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 734 IPR044974 GO:0006952
Vivi2g06526 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 465 IPR027417 -
Vivi2g06526 1163 Gene3D Ribonuclease Inhibitor 553 739 IPR032675 -
Vivi2g06526 1163 Pfam Leucine Rich Repeat 624 639 IPR011713 -
Vivi2g06526 1163 Gene3D - 202 365 IPR027417 -
Vivi2g06526 1163 PRINTS Disease resistance protein signature 236 251 - -
Vivi2g06526 1163 PRINTS Disease resistance protein signature 406 420 - -
Vivi2g06526 1163 PRINTS Disease resistance protein signature 641 657 - -
Vivi2g06526 1163 PRINTS Disease resistance protein signature 313 327 - -
Vivi2g06526 1163 Gene3D - 29 201 IPR035897 -
Vivi2g06526 1163 SUPERFAMILY L domain-like 510 875 - -
Vivi2g06526 1163 SUPERFAMILY Toll/Interleukin receptor TIR domain 25 178 IPR035897 -
Vivi2g06526 1163 SMART LRR_typ_2 813 834 IPR003591 -
Vivi2g06526 1163 SMART LRR_typ_2 836 859 IPR003591 -
Vivi2g06526 1163 SMART till_3 35 175 IPR000157 GO:0007165
Vivi2g06526 1163 Pfam TIR domain 36 203 IPR000157 GO:0007165
Vivi2g06526 1163 Gene3D Ribonuclease Inhibitor 741 886 IPR032675 -
Vivi2g06526 1163 Gene3D - 371 455 IPR042197 -
Vivi2g06526 1163 Pfam NB-ARC domain 224 442 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06526 Vivi-Chr2 201357503 201370204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06526 36 842 WRKY Transcription Factor Family AT4G12020 30.061 3.33e-90 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06526 - - var:108332841 1310.82