Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06515 ATGGCCTCCATGCCGTTGGGGCCAAACCACCATCAACCGCTGCAACCACCACCGCCGTTACCGTTACCGTTGCAACAGCCGCAAACCGTGAATGAAGCACCGAAAACGACGGCGGCTAGTGGAGTCTCCGGTATGGACACTGATAAGGAAATGGCAGCTACTGTCGTTGACAGTAATGATGCAGTCACTGGTCACATAATTTCAACTACTATTGGAGGCAAAAATGGTGAACCTAAACGGACAATCAGTTACATGGCCGAACGTGTTGTTGGCACAGGTTCATTTGGAATAGTTTTCCAGGCAAAGTGCTTGGAGACTGCTGAGGCAGTGGCTATAAAGAAAGTTTTGCAGGACAAGCGGTACAAAAATCGTGAGCTGCAGTTAATGCGCGTGATGGATCACCCAAATGTAATCTCTTTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGATGAACTGTTTCTGAACTTGGTGATGGAATATGTGCCTGAGACGATGTACCGAGTTCTAACTCACTACAATAATATCAACCAGAGAATGCCCCTAATTTATGTGAAATTATATACATATCAGATCTTTAGAGGACTGGCATATATTCATACTGTACCGGGGGTTTGCCATAGGGACGTGAAACCCCAAAATCTATTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGCGATTTTGGAAGTGCGAAAGTTCTGGTCAAGGGTGAAGCAAACATTTCATACATATGTTCACGATACTATCGGGCTCCAGAACTAATATTTGGTGCTACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCATTGTTCCCAGGAACAAATCAGGTGGATCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGTATGAACCCCGATTATACTGATTTTAGATTTCCTCAGATTAAAGCCCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTTCAATACTCACCAAGTCTTCGTTGCAGTGCGCTGGAAGCATGTGCGCATCCTTTCTTTGATGAGCTTCGAGAGCCCAATGCCCGGCTTCCTAATGGTCGTCCTCTGCCTCCACTCTTCAACTTTAAACAGGAATTATCTGGAGCATCTCCTGAACTGATCAATAAACTCATCCCAGAACATATCAGGCGGCAAACTGGTCTCGGCTTCCCATATCCCGGCTAG 1269 0.4507 MASMPLGPNHHQPLQPPPPLPLPLQQPQTVNEAPKTTAASGVSGMDTDKEMAATVVDSNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETAEAVAIKKVLQDKRYKNRELQLMRVMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLTHYNNINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGTNQVDQLVEIIKVLGTPTREEIRCMNPDYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINKLIPEHIRRQTGLGFPYPG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06515 422 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06515 422 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06515 422 Gene3D Transferase(Phosphotransferase) domain 1 164 411 - -
Vivi2g06515 422 MobiDBLite consensus disorder prediction 10 25 - -
Vivi2g06515 422 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Vivi2g06515 422 FunFam Shaggy-related protein kinase kappa 164 411 - -
Vivi2g06515 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vivi2g06515 422 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Vivi2g06515 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 48 413 - -
Vivi2g06515 422 Pfam Protein kinase domain 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06515 422 MobiDBLite consensus disorder prediction 1 27 - -
Vivi2g06515 422 CDD STKc_GSK3 79 371 IPR039192 -
Vivi2g06515 422 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Vivi2g06515 422 SUPERFAMILY Protein kinase-like (PK-like) 83 393 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06515 Vivi-Chr2 201191868 201197054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06515 88 406 MAP Kinase Gene Family AT3G59790 35.329 4.60e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi2g06515 Pkinase 8.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06515 K14502 - cpap:110814753 740.725