Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06470 ATGTCAGGCGTTGGACCTCTTTCACAAGACTGGGAGCCCGTCGTTCTCCGCAAAAAAGCCCCCACCTCCGCTGCCAGGAAGGATGACAAAGCCGTCAACGCCGCTCGCCGTTCCGGAGCCGATATCGAAACCATGAAGAAACATAATGCTGCGACGAACAGAGCTGCTTCTAGCAGCACTTCTTTGAACACTAAGAGGTTGGATGAGGATACAGAGAATTTAGCTCATGATCGGGTCCCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGAACGGACAAGAAACTTACTCAGGCGCAGCTTGCTCAAATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAATCAGGAAAAGCCATTCCAAATCAGCAGATAATTGGCAAGTTGGAGAGAGCTCTTGGTGCCAAACTGCGTGGGAAAAAATGA 429 0.4895 MSGVGPLSQDWEPVVLRKKAPTSAARKDDKAVNAARRSGADIETMKKHNAATNRAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARTDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06470 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Vivi2g06470 142 Gene3D - 71 142 IPR010982 GO:0003677
Vivi2g06470 142 FunFam Multiprotein bridging factor 1 71 142 - -
Vivi2g06470 142 CDD HTH_XRE 85 135 IPR001387 -
Vivi2g06470 142 SMART mbf_short4 86 141 IPR001387 -
Vivi2g06470 142 MobiDBLite consensus disorder prediction 1 77 - -
Vivi2g06470 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Vivi2g06470 142 MobiDBLite consensus disorder prediction 21 48 - -
Vivi2g06470 142 MobiDBLite consensus disorder prediction 50 64 - -
Vivi2g06470 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vivi2g06470 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Vivi2g06470 142 Pfam Helix-turn-helix 87 137 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06470 Vivi-Chr2 201059817 201062288 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vivi2g06470 MBF1 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06470 K03627 - gmx:100500420 248.44