Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06463 ATGAACTCAAATATGGATAATCACCAAGACTCACTAGTGTACACAGATAATTTTGAGTTGCATGATTTCATTGATGATCCAAACTTTGATCAATTTATAGATTTAATTAGAGGTGAGAATGAAGATGCAACAATATGTAACTTTGGTTCTGACCTTATCAATGATTGTTTCATTGATAATCATCAACAACCTCTTTCAATTCCACTAAACCCATTACTTGATCACAATAACAATAATATTAATAATATTGTGAATGTGTATGATCCAAGCTCTTCAACAATTGGCTCCTTCTCTTGTTATGATGAGGAGATTAAGGGAGAAGGAGAAAATAATGGTGATGATTCTCCGGCAACAACAACCACGAACTCGGTCGATGATGCCAAATCTAGGGCTAAAACCGATCGGTCCAAGACTCTCGTTTCGGAGAGGAGGAGGAGAGGTCGAATGAAGGATAAGCTTTATGCATTGCGTTCTTTAGTTCCCAACATTACAAAGATGGATAAGGCCTCTATAATCGGAGATGCGGTATCATATGTGCATGATCTTCAAGCACAATTTAGGAAGTTGCAGGCTGAGGTTTCAGGGCTTGAAGCATCTTTATCCATGTCTGAAAATTATCAAGGATCAATTAACAACACCATGAATGTTATTCAAAGCCATCCCATTTGCAAGAAAATTATCCAGGTGGAGATGTTTCAAGTGGAGGAAAGAAGTTACTATGCAAAAATAGTATGCAATAAAGGAGAAGGTGTTGCAGCTTCATTGTACAAGGCTCTTGAGTCTCTTGTGAATTTCAATGTTCAAAATTCAAACTTAGATACAATTTGTGACACTTTTCTACTTACATTTACATTGAATGTAAAAGGTTCTGAACAAGAAATGAATCTTCAAAATTTGAAGCTATGGGTGGCAGGAGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCCTTTTGA 957 0.3657 MNSNMDNHQDSLVYTDNFELHDFIDDPNFDQFIDLIRGENEDATICNFGSDLINDCFIDNHQQPLSIPLNPLLDHNNNNINNIVNVYDPSSSTIGSFSCYDEEIKGEGENNGDDSPATTTTNSVDDAKSRAKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQFRKLQAEVSGLEASLSMSENYQGSINNTMNVIQSHPICKKIIQVEMFQVEERSYYAKIVCNKGEGVAASLYKALESLVNFNVQNSNLDTICDTFLLTFTLNVKGSEQEMNLQNLKLWVAGALLNQGFEFMPSF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06463 318 Pfam Helix-loop-helix DNA-binding domain 141 183 IPR011598 GO:0046983
Vivi2g06463 318 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 129 199 - -
Vivi2g06463 318 Gene3D - 124 199 IPR036638 GO:0046983
Vivi2g06463 318 MobiDBLite consensus disorder prediction 127 145 - -
Vivi2g06463 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Vivi2g06463 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 210 IPR036638 GO:0046983
Vivi2g06463 318 Coils Coil 179 199 - -
Vivi2g06463 318 SMART finulus 139 188 IPR011598 GO:0046983
Vivi2g06463 318 MobiDBLite consensus disorder prediction 104 145 - -
Vivi2g06463 318 MobiDBLite consensus disorder prediction 112 126 - -
Vivi2g06463 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 20 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06463 Vivi-Chr2 200796951 200799473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06463 5 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.231 2.23e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g06463 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06463 K26214 - gmx:100805451 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06463 2 200796951 200799473 Vivi2g06463 2 200796951 200799473 ECH