Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06455 ATGATGTTGTCTAAAATGGATATGGAAGGAAGTATAGGCAATAACGAACACCTGACGAAAGGAAAACGAACAAAAAGAGGGATAAGGATGTTGTCTCCTTGCACCGTGGTGAATACCACGGTGACATCAAGTTGCTCAAGTGTTATTGAAGGTGGTGGCAGATCGTTTTCTTCCACCACCTTCGATAGCACTGAGGAGGAAGAGGAAGCGGATATGGCCAATTGTTTGATTCTTCTAGCTCAAGGAAGAACCGGAGGGCAAGAAAATCACCATCTCTCTGAACATCATCAACAAGTTGGTGGTTATAACAATATAGTAACTGAAAAGCCAACAAGAAACGGTTTTGAAAGCTATGAGTGCAAAACTTGTAACCGTTTTTTCCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAATCACCACCGCAGGTGGATTCGAAGAAGAAAACAATCATTTTCACAACAAGAATGTTTCTCTTGTTCCTCCGGTTTCTCTTGAATTACGGTGCGGTGGTAATCTAAACTTCCATGGCCATGGAAACAATAACAAACCCAATAGATCCAACAAGGTTCACGAGTGTTCGATTTGCGGCGCCGAGTTTACGTCCGGTCAAGCATTGGGTGGTCACATGAGAAGACACAGAGCTTGTACTAACAAAAACAACAACAACAACGTTGGTGATGTTCATGTTAAGTCTCGGAATGTTCTAGAATTGGATCTTAATCTTCCGGCGCCGGAGGAGGATCTCCGGGATTCAACTTTTCAGTTTCCGGCAATGGTGGGTTGCCATTATTAG 822 0.4294 MMLSKMDMEGSIGNNEHLTKGKRTKRGIRMLSPCTVVNTTVTSSCSSVIEGGGRSFSSTTFDSTEEEEEADMANCLILLAQGRTGGQENHHLSEHHQQVGGYNNIVTEKPTRNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEITTAGGFEEENNHFHNKNVSLVPPVSLELRCGGNLNFHGHGNNNKPNRSNKVHECSICGAEFTSGQALGGHMRRHRACTNKNNNNNVGDVHVKSRNVLELDLNLPAPEEDLRDSTFQFPAMVGCHY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06455 273 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Vivi2g06455 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 222 IPR013087 -
Vivi2g06455 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Vivi2g06455 273 SUPERFAMILY beta-beta-alpha zinc fingers 117 222 IPR036236 -
Vivi2g06455 273 SMART c2h2final6 118 140 IPR013087 -
Vivi2g06455 273 SMART c2h2final6 200 222 IPR013087 -
Vivi2g06455 273 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Vivi2g06455 273 Gene3D Classic Zinc Finger 182 248 - -
Vivi2g06455 273 Pfam C2H2-type zinc finger 199 224 - -
Vivi2g06455 273 Pfam C2H2-type zinc finger 118 143 - -
Vivi2g06455 273 PANTHER ZINC FINGER PROTEIN ZAT5 62 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06455 Vivi-Chr2 200674630 200675732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06455 57 273 C2H2 Transcription Factor Family AT2G28200 44.130 8.69e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g06455 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06455 - - psat:127086554 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06455 2 200674630 200675732 Vivi2g06455 2 200674630 200675732 ECH
Vivi1g07045 1 169688605 169689792 Vivi2g06455 2 200674630 200675732 ECH