Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06454 ATGATTTCAAGAACAACATCATCTACCTTTGAAAGTGGAAATCAAAACCTACAAAAGCTTCCTATGGTTATTGAAGATATGATGCCATTGCCAAACTCCATGGAAGGAATTTCAGGATCATCTCTACCCTCCAATTCTCTCCTCTTGAATCTCTCTATTCTCAAAGAAAAGTTCAATCAAGTTGAAACTCTTGTAGGTGTTATTCTCTCCCCAAATCATCATCAAGACTCATCAACTAATTCCATGGCCATATCCAACATGAACTCAACTATACAAGAAATGATAGTAACCGCCACATCAATCATGTTCACTTGTCAACACATGGCTCTTAGTTTTCCTCAAGGTACTACTTCTAATGCATGCACAAACCTAGAATTGCACAAGCCACAATCTAATATTCATTCAAACTTTGGCAACAATAACACAAACATAGATCTTAGAAGTCAAAGTCAAAACCTATTTTCTAATAATGAGTTAGAACATTTGGATTGGTTTAGTGAAAGCTATAATAGTAACATTAATTATAGGATCAAGGATGATATTGATGATCAAAGGGTTGATCATGAAATTAGTGAAACCAATATTAGCATAAAAGAGTCTAATGAAGCTATTTTGATGAAGAATAGTCGCGATCATGATAATACGGGCTTAAATTTTGGATCGTCTTATATTTGGGCCGACCCAGAATGTGACGATGAGATAGTTGAATTGGACGCGTCGGATTTATTAGCAAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTAACAAGAATAAAGACTATTTGATGAGTATGAAAAACAAGAAATATTCATGTCCTCATGAAGGGTGTAGATGGAATCAAAAGCATCTCAAGTTTCAACCATTGAAGTCTTTGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGTCCTAAAATGTATGTGTGCAAGAGGTGTAATCATAAGAATTTTTCAGTTCTTTCTGATTTGAGGACTCATGAGAAACATTGTGGTGATCTTAGGTGGCAATGCTCATGTGGCACTACTTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACATCACCCTGTTATTAATGGTTTGTCATATAGTACTCACACAAATTAA 1212 0.3581 MISRTTSSTFESGNQNLQKLPMVIEDMMPLPNSMEGISGSSLPSNSLLLNLSILKEKFNQVETLVGVILSPNHHQDSSTNSMAISNMNSTIQEMIVTATSIMFTCQHMALSFPQGTTSNACTNLELHKPQSNIHSNFGNNNTNIDLRSQSQNLFSNNELEHLDWFSESYNSNINYRIKDDIDDQRVDHEISETNISIKESNEAILMKNSRDHDNTGLNFGSSYIWADPECDDEIVELDASDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKNKDYLMSMKNKKYSCPHEGCRWNQKHLKFQPLKSLICAKNHYKRSHCPKMYVCKRCNHKNFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTHTN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06454 403 FunFam Zinc finger protein 574 247 272 - -
Vivi2g06454 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Vivi2g06454 403 SUPERFAMILY beta-beta-alpha zinc fingers 246 272 IPR036236 -
Vivi2g06454 403 SMART c2h2final6 337 359 IPR013087 -
Vivi2g06454 403 SMART c2h2final6 299 332 IPR013087 -
Vivi2g06454 403 SMART c2h2final6 248 270 IPR013087 -
Vivi2g06454 403 ProSitePatterns Zinc finger C2H2 type domain signature. 250 270 IPR013087 -
Vivi2g06454 403 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 41 394 IPR044300 GO:0010044|GO:0010447
Vivi2g06454 403 Gene3D Classic Zinc Finger 246 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06454 Vivi-Chr2 200618812 200620350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06454 44 392 C2H2 Transcription Factor Family AT5G22890 46.089 1.02e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g06454 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06454 - - psat:127082139 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06454 2 200618812 200620350 Vivi2g06454 2 200618812 200620350 ECH