Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06450 ATGGCCAAAGGAACGGATTCGAACGAGTTTATGGTTCATTCTAGGGTTCGAACGGGTCTTAAGAGAGAGTTTGCATTTGCAATGAAGGCTCAATCTGAGATCGACGGTTCATTAGGTCGAACCCGTGGTGGTAGTAAGAACCGGAATGAGCCGCCGGTTCGGGTTTCTCCGGTTGGGAAAAGGGCGAAGAAAACCGGTCCAGGGAAGGTTGTTGAGGATGTTGGGGGTGGTGGGTTGAGTGAGGAAGAGGCTAAGAGTGATGTGGTGGATCTTGGGAGCGATGATGAACCTAAGAATCTGGAATCTGTTTTTGAAACTGTGATTGATGAAAAAACCGTGTTGGGTGAGGCATTGAAGGAAGATAAAGCTATGCATGAAATGGAAATTGAAATAGAAAGTGTAAAACCTAATGTTTCTGAAACCCTTGAAACCCTTGAGGAACCCAAAGAGGAAGAATGTAATCTTGATGTTAAGGGTGGTAATGTTAAGAAAAAGAAGGTGGCGTTGGAGAAACCGGTGAGAAGGTTTACGAGATCAGCATTGAAAGAGAAAGATGAGGAAACTAAGGTTTTGGATAATGTTGATGTTGGAATTGATGATGTTGATGTTGAAAAGGAAGAAACTGAGGTTTTACCCATTATGGCGACTCCGACGCCGAGGAAATTGAATAAATCTTCTAAGAGGTTTCCTATTAAGCTAAAAGATCTTTTGGCTACGGGGATACTTGATGGGTTGAAGGTGAAATATATCAAGGGACAGAAGGCTCGAAAACCTGGAGAAAACGATTTTCGAGGAGTGATTAAAGATGCTGGGGTTTTGTGCTTTTGTGGTAGTTGTAAGGGGGTTCAGGTTGTCACGCCGACAGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCCCCCGAGTATACTTACCTTGAGAATGGGAAAAACCTTCGAGAAGTCATGAATGCCTGTTCAAGTGTTTCGTTGGAGATGTTGGATGATGCTGTCCAAATGGTCCTTGGTGATTTCATTATGCAGAAATCTACTATCTGTTTCAACTGCCGAGAGGTAATTTCTGAATCTAGTAGTGGTGTGTCAAAACTAGTATGCCATTCATGCATGGAGTTGAAAGATACTCAAGTTAACCGTCAATCAGCAACAACACGCAGTAAAAATATTTCCTCAGTAGTTCAACCCAGTTCACCAGAAACAGCAGCAGTTTCAGAACCATTAAAAACTGAGGAGGCGGTTCCAAAGTCATTAAACACTGAGATAGTGGTTCCTAACTCATCAAACACTGATACGGTGGTTCCCAACTCATTAGACACCGAGATGGTAGTTTCAGGGTCATCAAACACACAGACTATTCCAAAGGCATCAAACACTGGCATGAAGCAGAGTGCATCTCGTGGCAAGAGTCGGGGAAAAATAACTAGAAAGGATCTGCGGTTGCATAAGTTGGTATTTGAAGATGACGTGTTACCGGATGGAACTGAAGTGGGTTACTACTCTCATGGAAAGAAACTATTGGTCGGTTACAAGAAGGGATATGGAATTTTTTGTACCTGTTGCAATGCGGAAGTTAGTGCATCTCAGTTTGAAGCACATGCTGGATGGTCATCTCGACGCAAGCCTTACCTGCACATATATACCTCTAATGGAGTCTCACTACATGAGTTGTCCCTCTCTCTATCGAAAGATCGTAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTACCCCTGCCATGTATTCCTAGTGGTACTTGGTATTGTAAATACTGCCAGAATAATTTCCTGAAAGAGAGTAATGTGGAGCGCAACGTGAATGCTCTGGCAGCCGGAAGGATTGCAGGCATCGATCCTTTAGAGCAGATTAACAGAAGATGCATTCGAATTGTCAAAAGTGTAGCTGTTGACCACGGAGGATGTGCCCTGTGTGGATGTCATGATTTTGTTAAATTATTTGGTCCTCGGACAGTGATTATTTGTGATCAGTGTGAAAAGGAATATCATGTTGGGTGTTTGAAGGAGCATAACATGCAGAACCTAGAGGAATTGCCAGAAGGGAATTGGTTTTGTAGCACAGGTTGCAGTCAAATTCATTCTTCTCTAGTGAATTTGGTTGCTTCTGGGGAGAATTATCTCCCTGATTCTAGTCTAAGTTTGATTAAAAAGAAGTGTAAAGAGAAAGGTGTAGACACTGACGTCGAAAAGAAAGATGCAGACATTAGCGTTGTAGATAAAGGTGTAGACGCTGGCGTTGTTGATATAGGTGCGGACGCTGGCGTTGAAGGGAAAGGTGCTGACAGTGGTGCTGACAAAGAAGGTGCAGATGGTGGCGAAGAAGAGAAAGATGCAGTCACTGGCGTAGAAGAGAAAGGTGTCGACACTGTTGTTGAAGAGAAAGGAGGTTTGGACTCTATTGTTAAAGAGAAAGGTGTAGACACTGGCGTTGAAGAGAAATGTTTAGACACTGATGTTGGTCCTGAAATTAAATGGAGGGTTCTGAATTGGAAATTAGTTGTATCTGATGAAAATAAGCAATTGTCTAATGAATATAGGCAAGTGCTTTCAAAGGCTGTTTCCATCTTCCATGAGAGGTTTGATCCTATAGTTGATTCTTCTTCTGGCCGCGATTTCATTCCCACAATGCTGTTTGGAAAGAACATCCGCGGACAAGATTTTGGCGGAATGTACTGTGCAGTGCTCACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTTTTTGGGCCAGAAGTCGCAGAACTTCCCTTGGTGGCAACAGTTGCTGAGTACCAAGGACAGGGGTACTTTCAATGCCTATTCTCTTGCATTGAGAGACTACTTGGATCTCTTAGCGTGAAAAAACTTGTCCTACCGGCTGCTGATGAAGCTGAATCAATATGGACTAACAAATTTGGGTTTACAAAGCTCGAGCATGACGAGATTAACAATTACAAGAGATTTTATCATATGATGATCTTTCAAGGGACCTCAGTACTACAAAAGCCTGTTCCTGGACTACCAAGTGCTTCTCAGGAGATTGTGTAA 3117 0.4286 MAKGTDSNEFMVHSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEPPVRVSPVGKRAKKTGPGKVVEDVGGGGLSEEEAKSDVVDLGSDDEPKNLESVFETVIDEKTVLGEALKEDKAMHEMEIEIESVKPNVSETLETLEEPKEEECNLDVKGGNVKKKKVALEKPVRRFTRSALKEKDEETKVLDNVDVGIDDVDVEKEETEVLPIMATPTPRKLNKSSKRFPIKLKDLLATGILDGLKVKYIKGQKARKPGENDFRGVIKDAGVLCFCGSCKGVQVVTPTVFELHAGSANKRPPEYTYLENGKNLREVMNACSSVSLEMLDDAVQMVLGDFIMQKSTICFNCREVISESSSGVSKLVCHSCMELKDTQVNRQSATTRSKNISSVVQPSSPETAAVSEPLKTEEAVPKSLNTEIVVPNSSNTDTVVPNSLDTEMVVSGSSNTQTIPKASNTGMKQSASRGKSRGKITRKDLRLHKLVFEDDVLPDGTEVGYYSHGKKLLVGYKKGYGIFCTCCNAEVSASQFEAHAGWSSRRKPYLHIYTSNGVSLHELSLSLSKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFLKESNVERNVNALAAGRIAGIDPLEQINRRCIRIVKSVAVDHGGCALCGCHDFVKLFGPRTVIICDQCEKEYHVGCLKEHNMQNLEELPEGNWFCSTGCSQIHSSLVNLVASGENYLPDSSLSLIKKKCKEKGVDTDVEKKDADISVVDKGVDAGVVDIGADAGVEGKGADSGADKEGADGGEEEKDAVTGVEEKGVDTVVEEKGGLDSIVKEKGVDTGVEEKCLDTDVGPEIKWRVLNWKLVVSDENKQLSNEYRQVLSKAVSIFHERFDPIVDSSSGRDFIPTMLFGKNIRGQDFGGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATVAEYQGQGYFQCLFSCIERLLGSLSVKKLVLPAADEAESIWTNKFGFTKLEHDEINNYKRFYHMMIFQGTSVLQKPVPGLPSASQEIV 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06450 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 720 IPR013083 -
Vivi2g06450 1038 SUPERFAMILY FYVE/PHD zinc finger 562 616 IPR011011 -
Vivi2g06450 1038 ProSitePatterns Zinc finger PHD-type signature. 575 614 IPR019786 -
Vivi2g06450 1038 Pfam PHD-finger 575 616 IPR019787 -
Vivi2g06450 1038 ProSiteProfiles Zinc finger PHD-type profile. 572 617 IPR019787 -
Vivi2g06450 1038 SMART PHD_3 665 718 IPR001965 -
Vivi2g06450 1038 SMART PHD_3 574 615 IPR001965 -
Vivi2g06450 1038 FunFam PHD finger family protein 850 1026 - -
Vivi2g06450 1038 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 561 638 - -
Vivi2g06450 1038 Pfam Tify domain binding domain 265 320 IPR032308 -
Vivi2g06450 1038 Pfam Tify domain binding domain 508 556 IPR032308 -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 76 96 - -
Vivi2g06450 1038 CDD PHD1_AIRE 574 614 - -
Vivi2g06450 1038 Gene3D - 855 1025 - -
Vivi2g06450 1038 PANTHER AUTOIMMUNE REGULATOR 88 1027 - -
Vivi2g06450 1038 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 916 1002 IPR016181 -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 787 808 - -
Vivi2g06450 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 640 IPR013083 -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 380 403 - -
Vivi2g06450 1038 SUPERFAMILY FYVE/PHD zinc finger 659 715 IPR011011 -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 446 467 - -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 380 410 - -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 446 472 - -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 781 808 - -
Vivi2g06450 1038 MobiDBLite consensus disorder prediction 31 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06450 Vivi-Chr2 200496768 200503806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06450 230 746 PHD Transcription Factor Family AT2G36720 42.458 1.42e-141 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi2g06450 TDBD 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06450 - - psat:127086555 1704.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06450 2 200496768 200503806 Vivi2g06450 2 200496768 200503806 ECH