Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06444 ATGGCGGAGGACAACAAAGATGCGAGTGATTACAGTTCGGAGGATGAAGGAACTGAAGATTACAGACGCGGTGGATATCACAAGGTTCAGATTGGCGATACTTTCAAAAATGGGTGCTATGTGGTTCAGAGTAAGCTTGGATGGGGGCACTTTTCCACTGTTTGGCTCGCTTGGGATACTCACAAATTGCGATATGTTGCCTTGAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCAGCGATGGATGAAATAAAGATTCTCAAACAAATTGCTGAAGGGGATGTAGAGGATAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGCAACCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATAAAGTATAGTGATTATCGAGGTGTTCCCCTTCCCATGGTCAAAGAAATTTGTTACCATGTTTTGGTCGGTTTGGATTATTTGCACCGCGAGCTCTCTATAATACACACCGATTTGAAGCCCGAGAATGTCTTGATTCTCTCACCAATAGATCCATCTAAGGATCCTAGGAAATCCGGAGCCCCACTTATACTTTCAAAAACCAAAGATAAGACTGTGTCCAGGAATGGGACCACAAATGATAAAAGTTCAAATGGAGATCTAACCAAGAACCAGAAAAAGAAAATGCGCAAAAAGGCTAAAAAAGCAGCTCAGAAGGAAGGTTCCGAGGTAGCAGAGGAGGATTCTGAAGCACCGGAGCAAGATAATTGTAGTAATGATGTGAAACCGAATGTAGAAAATGGTGAAGGTAAACCTAATAGTTCTGCTAGTTTAGATGAATCAGCAAAGACTTCTGAAATTCAGGATGTTCCACAAGGAAGTCAAGTTTCTAGGAGAGGTAGCCGCTCTACCAGAAAGAAGTTGCTTGCTGCTGTTGATCTCAAGTGCAAGCTGGTGGATTTCGGTAATGCTTGTTGGACGTATAAACAATTTACGAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTTGGTTCCAAATACTCAACTCCAGCTGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTCGATCCTCACAGTGGTGATAACTATGACAGGGATGAGGACCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCTCTTAGTGGCCGCTATTCCCGGGACTTTTTCAATAGATGTGGTGATTTGAGACACATTCGTCGGTTGCGGTTCTGGCCTATCACTAAGGTGTTGACGGAGAAATATGATTTCAGTGAGCAAGATGCAAGTGACATGGCTGACTTCCTTGTTCCATTACTTGACTTTGTTCCTGATAAGAGGCCAACGGCTGCTCAGTGCCTCAATCATCCATGGATGAGTGCAGGTCCTCGGACTCTTGAGCCCTCTTTGACTAACGTGCAACCTGATGCTGCTAACGGTGAAAAGTCTCTAAAGTCTAGGGAAAAGACCGAGCATGAGGCTGTTGAAGTTGGTATGGGAAATATGGTGATTGATGGAAATCAAATGCCACTCAAAGATTTTTAA 1596 0.4305 MAEDNKDASDYSSEDEGTEDYRRGGYHKVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTHKLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDVEDKKCVVKLLDHFKHSGPNGNHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICYHVLVGLDYLHRELSIIHTDLKPENVLILSPIDPSKDPRKSGAPLILSKTKDKTVSRNGTTNDKSSNGDLTKNQKKKMRKKAKKAAQKEGSEVAEEDSEAPEQDNCSNDVKPNVENGEGKPNSSASLDESAKTSEIQDVPQGSQVSRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALSGRYSRDFFNRCGDLRHIRRLRFWPITKVLTEKYDFSEQDASDMADFLVPLLDFVPDKRPTAAQCLNHPWMSAGPRTLEPSLTNVQPDAANGEKSLKSREKTEHEAVEVGMGNMVIDGNQMPLKDF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06444 531 MobiDBLite consensus disorder prediction 202 219 - -
Vivi2g06444 531 CDD STKc_SRPK 29 476 - -
Vivi2g06444 531 MobiDBLite consensus disorder prediction 256 299 - -
Vivi2g06444 531 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g06444 531 SMART serkin_6 40 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06444 531 FunFam CMGC/SRPK protein kinase 26 125 - -
Vivi2g06444 531 MobiDBLite consensus disorder prediction 180 303 - -
Vivi2g06444 531 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 6 498 - -
Vivi2g06444 531 Gene3D Transferase(Phosphotransferase) domain 1 123 477 - -
Vivi2g06444 531 ProSiteProfiles Protein kinase domain profile. 40 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06444 531 FunFam Serine/threonine-protein kinase SRPK-like protein 306 476 - -
Vivi2g06444 531 SUPERFAMILY Protein kinase-like (PK-like) 35 485 IPR011009 -
Vivi2g06444 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vivi2g06444 531 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vivi2g06444 531 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Vivi2g06444 531 Pfam Protein kinase domain 313 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06444 531 Pfam Protein kinase domain 40 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06444 Vivi-Chr2 200321898 200326601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06444 7 525 EF-hand Containing Proteins AT5G22840 70.510 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vivi2g06444 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06444 K08832 - gmx:100791829 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06444 2 200321898 200326601 Vivi2g06444 2 200321898 200326601 ECH