Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06432 ATGAGTAGTAGCAAGGTCTCCGACGATCACCTCTACACCGTCCGATCCATAGTCGGTTCGGAATTCACCGACATGGACATCATAAGAGCCCTTCACATGGCCAAAAACGACGTCACTGCCGCCATCAACATTATCTTCGATACTAGCACCCCTAAATCTCAACCTACCCACGCCATCAATAAACGAAGGGTTTCTCCTCCGAAATCAACTCCTCCCACGGTCACATCCAGCTCCAAGCGCAATGCCAATGCAGAAAACAAGAAGTGCCCTGTCGAGTCTGGTTCCATCATGTCTGGTTCTACTGACTGGTGGTTCATTGGCTCCGGTGAAGTGGCAGGGCTGTCCACGTGTAAAGGGAGGGCTTTAAAATCCGGTGATGCAGTGATTTTCAAGTTTCCAGCCAAAAAGGTCTCTGTCTCGCCTTCTCCAGGTAAGGGTTTTGGGCGAGCAGCGGCTTGTTCTGAGATAGTTCGGTTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCGAATGAATGGGCTCGGTGTTTGTTGCCTCTGGTGCGGGATAGTAAGGTTAAGGTTGAAGGGAAATGTGAATTTGCACCTAATGTTTTGGGCATCATGGATACTATCATTTTGTCAATCAGTGTATTCATCAATAGGTCAATGTTTGTTAAGCAACATCAGGTTTCTCTTAAGGATGCTGCAAATTCGACAGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTACGATTGCTTGGTCTTAGTCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTGTTCCAACAAGCGTCCTTTCAGTCAAACGGTCACATCACTACATGCCAAGTCTGAGCGTCCTTTGCAAAATGGTCATGAGAATGAAACTGAAGATACTGTTTCCGAATTTGATCTTGAAAACATTGTTGGTGTTGCGTCAAGTTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGATCTGCGACCCTATCAAAAACAAGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGCCAAGGGACGATACTACAACAACCCTTCATCCTTGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCCATGGGACTTGGAAAGACAGTAATGACCATATCCCTCCTCGTTGCCCATTCAGGAAGGGGTGGATTATTAGGCAGTCAACCCATAACCCAGCCATTTATTGAAGGTGGTGAAGTTAGTGATACTGGTACAATTCCCAATTCTGCAAACATTCCAAAGAAGGTAACCAAATTTACTGGTTTTGATAAACCAACCAAGCAAAGCAATTCTCTAACAAGTGGCGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCACGTGCGCCCTGGGTCCCTGTCTCTATATGTTCATTATGGGCAAAGTAGGCCCAAAGATGCCAAAAGTCTAGCTCAATGTGACGTTGTAATAACTACATACGGAGTTTTGGCTTCTGATTTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCAATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGTCAAGTTTCTATGGCTGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAAGATGTTTACAGTCTTCTTCGCTTTTTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGCGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTAAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTTGTTCTCCCTCCTGCTGATATGCAGATAATTTATTGTGAACCCACAGAAGCTGAAAAAGACTTTTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATTCTAGAGCTACTTTTACGTCTTCGGCAATGCTGTGACCATCCGTTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAAGAAACTAGCTAAGCGCTTCCTTAAAGGAACTTGTAATGCTTCAGAAGGTGAAGAAAAAGATGCACTCTCACGAGCTTATGTTCAAGAAGTTGTGGAGGAGCTGCGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCGTGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTATGTCTGGTTTATGTCCTGTTTGTAGGAAAACGGTCAGCAAGCAGGATCTTATCACTGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGGTAACCGGTCTTTTGAATGAACTTGAAAATCTCCGCTCCTCAGGATCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTAATCGGAATAAAATATCATTTCTTCGTCTTGATGGGACATTGAATCTGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGTGACATACAGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCCGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATTGTGAAGGGGTCAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAAAGAATGATTTCTGGTGCCTTGACGGATCAGGAGGTTCGATCTGCACGAATTGAGGAGTTGAAGATGCTTTTTACTTAG 3039 0.4439 MSSSKVSDDHLYTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTSTPKSQPTHAINKRRVSPPKSTPPTVTSSSKRNANAENKKCPVESGSIMSGSTDWWFIGSGEVAGLSTCKGRALKSGDAVIFKFPAKKVSVSPSPGKGFGRAAACSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDSKVKVEGKCEFAPNVLGIMDTIILSISVFINRSMFVKQHQVSLKDAANSTDESVFHPLPALLRLLGLSPFKKAELTPGDFCSNKRPFSQTVTSLHAKSERPLQNGHENETEDTVSEFDLENIVGVASSSELEEMDPPENLLCDLRPYQKQALHWMIQMEKGRPRDDTTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTVMTISLLVAHSGRGGLLGSQPITQPFIEGGEVSDTGTIPNSANIPKKVTKFTGFDKPTKQSNSLTSGGNLIICPMTLLGQWKAEIETHVRPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGVLASDFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLKKLAKRFLKGTCNASEGEEKDALSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSMSGLCPVCRKTVSKQDLITAPTESRFQVDIEKNWVESCKVTGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFNRNKISFLRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGSVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06432 1012 SMART helicmild6 876 959 IPR001650 -
Vivi2g06432 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 758 828 IPR013083 -
Vivi2g06432 1012 Gene3D - 659 1012 IPR027417 -
Vivi2g06432 1012 Pfam Zinc finger, C3HC4 type (RING finger) 774 822 - -
Vivi2g06432 1012 CDD SF2_C_SNF 843 970 - -
Vivi2g06432 1012 CDD DEXDc_SHPRH-like 328 643 - -
Vivi2g06432 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 847 1012 IPR001650 -
Vivi2g06432 1012 MobiDBLite consensus disorder prediction 66 84 - -
Vivi2g06432 1012 SUPERFAMILY RING/U-box 764 823 - -
Vivi2g06432 1012 Pfam SNF2-related domain 331 721 IPR000330 GO:0005524|GO:0140658
Vivi2g06432 1012 Gene3D - 385 655 IPR038718 -
Vivi2g06432 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 643 IPR027417 -
Vivi2g06432 1012 Pfam Helicase conserved C-terminal domain 851 959 IPR001650 -
Vivi2g06432 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 1006 IPR027417 -
Vivi2g06432 1012 ProSitePatterns Zinc finger RING-type signature. 792 801 IPR017907 -
Vivi2g06432 1012 SMART ring_2 777 816 IPR001841 -
Vivi2g06432 1012 SMART ultradead3 324 627 IPR014001 -
Vivi2g06432 1012 MobiDBLite consensus disorder prediction 51 92 - -
Vivi2g06432 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 386 605 IPR014001 -
Vivi2g06432 1012 ProSiteProfiles Zinc finger RING-type profile. 777 817 IPR001841 -
Vivi2g06432 1012 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 98 1012 - -
Vivi2g06432 1012 SMART HIRAN_2 106 214 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi2g06432 1012 Pfam HIRAN domain 106 210 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06432 Vivi-Chr2 200195033 200204459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06432 4 1012 RAD5 or RAD16-like Gene Family AT5G22750 69.864 0.0 1445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06432 SNF2_N 3e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06432 K15505 - gmx:100794558 1671.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06432 2 200195033 200204459 Vivi2g06432 2 200195033 200204459 ECH