LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g06412	ATGATGGGTGTTATTAAGGATGATGGCTTCTGGATGCCTGTTGATCCTGTCACTGAAAAGACAGTTGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCGAAAGAGAAGGCCCAGGGATACAAGTTGGATCGTTCTCACATATTTACTGTTAGTATGTTTGATGATTTTGACCGGTTTATGAGAGTGCCGGATGAGTGGGCTCCTCCTCCAAGAAAAGAATATGCCCCAGGGGAAAATCTCCAACAATGGCTAACTGATGCTAAGGCCCGAGATCAGTTTGTGATTCGTGCTAGTTCAGATACGGAGGTTTTGTGGAATGATGCTAGGCATTTAAAGCCTGATCCTGTTTATAAACGTGCATTTTGGACTGAGAGTTTTGTACAATGGTCTCCTCTGGGCACATACTTGGCAACAGTTCACCGTCAGGGGGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGTTACGCTCATCCCCAGGTGAAGCTAATTGATTTTTCACCTGGCGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCCCGGGATGCTAATAGGGTTATAATAAATATATTTGATGTGAGAACTGGTAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGATTTCGCTATCGGAGGTACCGGGGGTGTCACTGGAGTGTCTTGGCCTGTTTTCAAATGGAGTGGTGGAAGGGAAGATAAGTACTTTGCAAGGATGGGGAAGAATGTACTTTCAGTATACGAGGCAGAAACATTTTCTCTCGTTGACAAAAAATCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCCATCATTTCACTGTTTGTTCCCGAGTCAGGAGGTGGGAACCAGCCTGCCAGGGTAAGTCTTGTTTCAATCCCCAGCAAAGAAGAACTCAGACAGAAAAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTGGACCGATATACCAAGACAAAGAAAAGTACTTACACTGGCTTTGAGCTTTTCCGTATTAAGGAACGTGACATACCGATTGAAGTCCTAGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAGGGACATAGATTTGCCGTTATTCACGGCGACAACCCTAAGCCTGACATTAGTATCTATTCTATGCGGACTGCTCAGAACACTGGTCGTGTTTCAAAGCTCACTACTCTGAAAGGAAAGCAGGCAAATGCTTTATTTTGGTCTCCTGCAGGCCGCTTCATTGTATTAGCAGGGTTGAAAGGATTCAAACTGTAA	1356	0.4403	MMGVIKDDGFWMPVDPVTEKTVGYCFIEYNTPQEAELAKEKAQGYKLDRSHIFTVSMFDDFDRFMRVPDEWAPPPRKEYAPGENLQQWLTDAKARDQFVIRASSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVIINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGREDKYFARMGKNVLSVYEAETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPESGGGNQPARVSLVSIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFKL	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g06412	451	Gene3D	-	368	448	IPR011042	-
	Vivi2g06412	451	SUPERFAMILY	DPP6 N-terminal domain-like	131	448	-	-
	Vivi2g06412	451	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	2	447	IPR011400	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Vivi2g06412	451	SUPERFAMILY	RNA-binding domain, RBD	10	59	IPR035979	GO:0003676
	Vivi2g06412	451	Gene3D	-	2	67	IPR012677	-
	Vivi2g06412	451	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	11	50	IPR000504	GO:0003723
	Vivi2g06412	451	Hamap	Eukaryotic translation initiation factor 3 subunit B [EIF3B].	6	451	IPR011400	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Vivi2g06412	451	FunFam	Eukaryotic translation initiation factor 3 subunit B	1	67	-	-
	Vivi2g06412	451	Gene3D	-	94	295	IPR015943	GO:0005515
	Vivi2g06412	451	Pfam	Eukaryotic translation initiation factor eIF2A	319	449	IPR013979	-
	Vivi2g06412	451	FunFam	Eukaryotic translation initiation factor 3 subunit B	94	295	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g06412	Vivi-Chr2	199833531	199837169	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g06412	2	449	Eukaryotic Initiation Factors Gene Family	AT5G27640	76.562	0.0	756

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g06412	K03253		-	gmx:100817394	865.529