Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06411 ATGAGATTGGAGAAATGCTGGTTTTGTTCTTCAACTGTATACCCTGGACATGGGATCCAGTTTGTTCGCAATGATGCAAAGATTTTTCGGTTTTGTAGATCAAAATGCCACAAGAATTTTAAAATGAAGAGGAATCCTCGTAAGGTAAAATGGACCAAGGCATATAGGCGCGTGCATGGAAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAGAGATATGACAGGAATCTTGCTGTTGATGTACTCAAGGCCATTCCTAAGATTGAAAAAATCAGAGTTAGCAGGGAGGAGAGACACCACAAGAACAGGATGAAAGGCAACAAGGCGAAAGTGCAGAAGGAGGCAGCGAAGGAGTACGGGCAGAGCATCCATATGGTCAAAGCTCCTTCCGTATTACAACAGGAGAAGATCAAAGTCAAGGTTTCCCAACAACAATCAGAAGAGAATCCTCTCATGGAAGAGTGA 489 0.4315 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAVDVLKAIPKIEKIRVSREERHHKNRMKGNKAKVQKEAAKEYGQSIHMVKAPSVLQQEKIKVKVSQQQSEENPLMEE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06411 162 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Vivi2g06411 162 MobiDBLite consensus disorder prediction 102 126 - -
Vivi2g06411 162 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Vivi2g06411 162 SMART 4TRASH 6 44 IPR011017 -
Vivi2g06411 162 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Vivi2g06411 162 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Vivi2g06411 162 PANTHER 60S RIBOSOMAL PROTEIN L24 1 158 IPR000988 -
Vivi2g06411 162 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Vivi2g06411 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06411 Vivi-Chr2 199825758 199827888 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06411 1 162 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 70.370 1.92e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06411 K02896 - gmx:100306000 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06411 2 199825758 199827888 Vivi2g06411 2 199825758 199827888 ECH