LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g06394	ATGGAACCATGGCTCGACGATCTAACCGACGACCTCCAAAGCCTAAGCTTCGCCTCCACCACCACCACAACTGCCACCACCGCCGACATCAAACGCAGCACAAGCTTCAGTTCCGAAACAACCACAAACGCCTCAACTTCCACAAGATCCCTTCCTCCAACCACCAAACCTCACGCTCCTTCCTCCGACCCTCGCTGGTCCGCCATTCACCGGATCCGATCAGAGTCACCTTCCCGTCGCATCCTTCCTTCCGACCTCCGTTTCTCCCGCCGTCTCGGTTCCGGTGATATCAGTTCCGTTTATCTCGCGGAACTCAACGACGACGGGAAAATCCCGGCGATGTTCGCCGCGAAGGTGATGGATAAGAAGGAGCTTATTAGTAGGAGTAAGGAAGGAAGAGCGAAGACGGAGAGAGAGATACTCGAATCTCTTGATCATCCGTTTTTGCCTACTCTTTATGCTACAATCGACGCCGCGAAATGGCTTTGTTTGTTAACGGAGTTTTGTCCCGGCGGCGATCTTCACGTTCTCCGGCAACGCCAGCAGAACAAACGCTTCACTGAATCCGCCGTGAGATTCTATGCATCAGAGGTGTTAATGGCCCTTGAATACCTTCACATGTTGGGAATAGTATACCGTGATCTCAAACCAGAGAACGTGTTAGTTAGATCAGATGGCCATATAATGCTCACAGACTTCGACCTCTCCTTAAAATGCGATGACAATTCCACACCAACAGCACAGATAATAATCTCCAGTCAAGACTCTCCTCAAGTAGCCCCACAGAAAAACCCCCACTCCGAACCCTCCCAATTCGCTTCATCTTCATGCATAATCCCCAACTGTATAGTCCCAGCTGTATCCTGTTTCCAACCAAAACGCAAGCGAAAGAAGAAACAAACTCAACTTCACGGCCCTGAGTTTGTTGCTGAACCTATTGATGTTCGCTCCATGTCATTCGTTGGGACACACGAATACTTAGCTCCTGAAATAGTGTCTGGTGAGGGACACGGTAGTGCTGTGGATTGGTGGACCTTAGGGATATTTATATTTGAATTATTCTACGGCGTCACACCTTTTCGAGGCTTGGATAATGAACTCACTCTAGCAAACATCGTGGCTCGAGCTTTGGAGTTCCCAAAGGAACCCACCGTGCCAGCCACGGCAAAAGATCTTATCTCACAGTTATTGATTAAGGACCCAGCAAGGAGGTTGGGATCAATAATGGGAGCTTCTACAATCAAACACCACTCATTTTTCCAAGGTGTGAATTGGGCATTGTTAAGGTGTACAACTCCACCTTATGTTCCACCACCTTATACTAAAGATAAAGAAGATGTATCTGATGAAAGTTGTCCACAAACTCCTGTTGATTATTATTGA	1383	0.4808	MEPWLDDLTDDLQSLSFASTTTTTATTADIKRSTSFSSETTTNASTSTRSLPPTTKPHAPSSDPRWSAIHRIRSESPSRRILPSDLRFSRRLGSGDISSVYLAELNDDGKIPAMFAAKVMDKKELISRSKEGRAKTEREILESLDHPFLPTLYATIDAAKWLCLLTEFCPGGDLHVLRQRQQNKRFTESAVRFYASEVLMALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDNSTPTAQIIISSQDSPQVAPQKNPHSEPSQFASSSCIIPNCIVPAVSCFQPKRKRKKKQTQLHGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGLDNELTLANIVARALEFPKEPTVPATAKDLISQLLIKDPARRLGSIMGASTIKHHSFFQGVNWALLRCTTPPYVPPPYTKDKEDVSDESCPQTPVDYY	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g06394	460	Pfam	Protein kinase domain	317	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06394	460	Pfam	Protein kinase domain	89	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06394	460	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	210	222	IPR008271	GO:0004672\|GO:0006468
	Vivi2g06394	460	SMART	serkin_6	86	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06394	460	SUPERFAMILY	Protein kinase-like (PK-like)	64	450	IPR011009	-
	Vivi2g06394	460	Gene3D	Transferase(Phosphotransferase) domain 1	316	438	-	-
	Vivi2g06394	460	PANTHER	FLIPPASE KINASE 1-RELATED	28	442	-	-
	Vivi2g06394	460	MobiDBLite	consensus disorder prediction	18	67	-	-
	Vivi2g06394	460	Gene3D	Transferase(Phosphotransferase) domain 1	173	244	-	-
	Vivi2g06394	460	FunFam	serine/threonine-protein kinase D6PK-like	315	438	-	-
	Vivi2g06394	460	ProSiteProfiles	Protein kinase domain profile.	86	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06394	460	MobiDBLite	consensus disorder prediction	439	460	-	-
	Vivi2g06394	460	Gene3D	Phosphorylase Kinase; domain 1	85	172	-	-
	Vivi2g06394	460	FunFam	serine/threonine-protein kinase D6PKL2	85	172	-	-
	Vivi2g06394	460	MobiDBLite	consensus disorder prediction	18	56	-	-
	Vivi2g06394	460	FunFam	serine/threonine-protein kinase D6PK-like	173	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g06394	Vivi-Chr2	199595067	199598971	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g06394	1	460	AGC Kinase Gene Family	AT3G44610	65.042	0.0	573

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vivi2g06394		Pkinase	1.5e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g06394	K08286		-	gmx:100792738	729.939