Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06393 ATGCAGGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGTTCTGTAAAAGTATACGATGTAGTCAACTTTGATATGATGGTGATGATTCGGTTGCCATACATTCCTGGTGCCATTGAATGGGTTTATAATCAAGGGGATGTCAAAGCTAGTCTTGCCATCAGTGATAGGAACTCATCTTTTGTTCATATATATGATGCACGGTCTGGTTCAAATGATCCCATCATCTCAAAAGAGATTCATTCGGGCCCAATTAAAGTTATGAAGTTCAATCCTGTGTATGATACTGTAATTTCAGCAGATACAAAGGGTTTCATTGAATATTGGAATCCTACAACACTCCAGTTCCCAGAGGATGAGGTGAGTTTTAAGGTTAGAAGTGATACTAACCTCTTCGAAATAGTAAAATGCAAGACTTCTCTCTCGTCTATTGAGGTCAGCCCAGATGGTAAACAATTTTCCATCACATCACCTGATCGTAGGATACGTGTGTTTTGGTTCAGAACGGGTAAACTAAGGCGTGTTTATGATGAATCTTTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATAATCCATTGTATCGATTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTTGAGAGAGAAATTGAAAAGACAGAAAGTGCACCACAACCAAATGCAGTTTTTGATGATAGTTCCAACTTTCTTATATATGCAACCTTGCTTGGGATTAAAATTGTTAATTTACACACCAATACAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGATTCTTAAGAATTGCTTTATATCATGGGGAACGAAGTGGCAAAAAAGTGAGAAAGATTCCTTCAGCAGCCGCAAATGCTAATGAGAGCAAGGAGCCATTGACAGATCCCACACTCCTATGTTGTGCTTTCAAAAAGCATAGGATTTATTTATTTAGTCGAAGAGAACCTGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCACTAACAACATCACTTCCTGACAATGTGATTATGCACACCACTATGGGTGATATTCACATGAAGTTGTACCCGGAGGAATGTCCAAAATCTGTGGAAAACTTTACAACTCACTGCAAAAATGGTTATTATGACAATCTTACTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGACGGCACTGGTGGACAGTCCATTTGGGGTAGAGAATTTGAAGATGAATTTCACAAAAGTTTAAGGCATGATAGGCCTTTCACATTGTCAATGGCAAACGCTGGCCCAAATTCCAATGGTTCTCAGTTTTTTATCACCACAGTGGCCACTCCATGGCTGGACAACAAGCACACTGTATTTGGTAGAGTTGTGAAAGGAATGGATGTTGTCCAGGCGATAGAAAAAGTCAAGACGGACAAGGGAGAAAAGCCATATCAAGATGTTAAAATTTTAAATGTCACTGTACCAAAGTCTTGA 1542 0.3943 MQVSIDGLLCCTISNDRSVKVYDVVNFDMMVMIRLPYIPGAIEWVYNQGDVKASLAISDRNSSFVHIYDARSGSNDPIISKEIHSGPIKVMKFNPVYDTVISADTKGFIEYWNPTTLQFPEDEVSFKVRSDTNLFEIVKCKTSLSSIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDNPLYRLEAIDFGRRMAVEREIEKTESAPQPNAVFDDSSNFLIYATLLGIKIVNLHTNTVARILGKVENNDRFLRIALYHGERSGKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKALTTSLPDNVIMHTTMGDIHMKLYPEECPKSVENFTTHCKNGYYDNLTFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNSNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDKGEKPYQDVKILNVTVPKS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06393 513 CDD cyclophilin_WD40 361 508 - -
Vivi2g06393 513 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 394 411 IPR020892 GO:0003755|GO:0006457
Vivi2g06393 513 Gene3D - 1 333 IPR015943 GO:0005515
Vivi2g06393 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 373 388 IPR002130 GO:0000413|GO:0003755
Vivi2g06393 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 470 485 IPR002130 GO:0000413|GO:0003755
Vivi2g06393 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 442 457 IPR002130 GO:0000413|GO:0003755
Vivi2g06393 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 469 IPR002130 GO:0000413|GO:0003755
Vivi2g06393 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 399 411 IPR002130 GO:0000413|GO:0003755
Vivi2g06393 513 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 355 509 IPR044666 -
Vivi2g06393 513 SUPERFAMILY Cyclophilin-like 357 510 IPR029000 -
Vivi2g06393 513 SUPERFAMILY WD40 repeat-like 3 183 IPR036322 GO:0005515
Vivi2g06393 513 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 341 511 - -
Vivi2g06393 513 Gene3D - 349 513 IPR029000 -
Vivi2g06393 513 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 356 510 IPR002130 GO:0000413|GO:0003755
Vivi2g06393 513 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 360 510 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06393 Vivi-Chr2 199577624 199583603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06393 360 510 U-box Gene Family AT5G67530 45.695 4.12e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06393 K12736 - gmx:100792207 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06393 2 199577624 199583603 Vivi2g06393 2 199577624 199583603 ECH