Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06375 ATGGCGGAAGAACACAGATTGCAAGCACCGCGATTATGCGTCAACAATTGCGGATTCTTCGGCAGCGCCGCCACGGAGAATCTCTGTTCACGGTGCTACCGAGATTTACAGATTAAGGAACAACAAGCTGAGTCAGCGAAACTCGTTCTCAATCAATCGATCTCGGTGCCGGAGAAGGCGGCGGCGGCGTTGGTTTCTGAACCGTCGTCTTCGTTACCTGGACCGGTCGATTTGCCTAGTGTTGTTGAAGAGGCGAAAGCGAAACCGTTGCAGCAGAATCGGTGCACGACGTGTAAGAAGCGCGTGGGGCTCACGGGGTTTAAATGCAAGTGCGGGATGATGCTGTGTGGGACCCACCGTTACCCGGAGCAGCATGATTGTGAATTTGATTTCAAGGGGTTGGGGAGAGAGCAGATCGCGAAGGCGAACCCGGTGGTGAAGGGTGAGAAGCTCGAGAAGATTTGA 465 0.5398 MAEEHRLQAPRLCVNNCGFFGSAATENLCSRCYRDLQIKEQQAESAKLVLNQSISVPEKAAAALVSEPSSSLPGPVDLPSVVEEAKAKPLQQNRCTTCKKRVGLTGFKCKCGMMLCGTHRYPEQHDCEFDFKGLGREQIAKANPVVKGEKLEKI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06375 154 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vivi2g06375 154 Gene3D - 69 150 IPR035896 -
Vivi2g06375 154 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 154 - -
Vivi2g06375 154 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Vivi2g06375 154 Gene3D - 1 61 - -
Vivi2g06375 154 SMART AN1_Zf_4 95 132 IPR000058 GO:0008270
Vivi2g06375 154 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vivi2g06375 154 FunFam Zinc finger AN1-type containing 6 74 150 - -
Vivi2g06375 154 Pfam AN1-like Zinc finger 95 131 IPR000058 GO:0008270
Vivi2g06375 154 SUPERFAMILY AN1-like Zinc finger 81 149 IPR035896 -
Vivi2g06375 154 ProSiteProfiles Zinc finger AN1-type profile. 89 135 IPR000058 GO:0008270
Vivi2g06375 154 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06375 Vivi-Chr2 199325609 199326576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06375 1 154 C2H2 Transcription Factor Family AT3G52800 49.711 4.31e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06375 - - gmx:100807363 228.794