Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06374 ATGGGTTTGAGGGATCAATACAATATTATAGAAGACAAAAATCTACACCTTCAAACCCCAACTTTCATTGAATGGCTCAAACCATCTTCATCACTCTCATCATCATCATCTCCTTCATCTTCTCTAACTCATGAAAAAAAATTATCTCAAGAAACTTTTCAGTTTTTGCCCTTAAAAGAAGATCAAGAGATGCAACAAAAGGAAGGTTTTGAAGTAAAAGAAGGAATTAAACAAGTGACTGTGACTTTGCACATTGGATTACCTAACATAGGAAGTGAGTTTGAGGATCATGGTGAGAAGAATAAGGTTTTTGATCATGTTAAGGAAGAACAAGAATTGAAGAAAAACAACATACAAGGTTTTTGTTTTAAGGAGGAGAAGAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGTAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCTGAATTTAGGAAAGGACCAGATTCACTTAAAGGAACACAACCAGCAGCAATGTTAAGGTTACCATGTTATTGTTGTGCTAATGGTTGCAAAAACAATATTAATCATCCAAGAGCAAAACCATTGAAGGATTTCAGAACTCTTCAAACTCATTATAAAAGAAAACATGGAACAAAACCGTTTATGTGTAGAAAATGTTCTAAGGCATTTGCAGTTAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGAAAGTTTTGGTATTGCACTTGCGGTTCCGATTTTAAACATAAGAGATCTCTTAAAGATCATGTTAGATCCTTTGGGAAAGGTCACTCTCCTCATCCTTCTCTAGAAGGGTTTGAAGATGAGAAACAATGCAGTAATACCGGGTCCGATGATGATGAAGTTGTTCATACATGA 924 0.3604 MGLRDQYNIIEDKNLHLQTPTFIEWLKPSSSLSSSSSPSSSLTHEKKLSQETFQFLPLKEDQEMQQKEGFEVKEGIKQVTVTLHIGLPNIGSEFEDHGEKNKVFDHVKEEQELKKNNIQGFCFKEEKRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPHPSLEGFEDEKQCSNTGSDDDEVVHT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06374 307 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Vivi2g06374 307 Gene3D Classic Zinc Finger 187 277 - -
Vivi2g06374 307 SUPERFAMILY beta-beta-alpha zinc fingers 122 167 IPR036236 -
Vivi2g06374 307 MobiDBLite consensus disorder prediction 272 307 - -
Vivi2g06374 307 PANTHER ZINC FINGER PROTEIN WIP2 28 296 IPR043584 GO:0003700|GO:0010468
Vivi2g06374 307 Gene3D Classic Zinc Finger 143 166 - -
Vivi2g06374 307 SMART c2h2final6 144 166 IPR013087 -
Vivi2g06374 307 SMART c2h2final6 228 248 IPR013087 -
Vivi2g06374 307 FunFam Zinc finger protein WIP2 197 279 - -
Vivi2g06374 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Vivi2g06374 307 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06374 Vivi-Chr2 199314196 199316302 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06374 8 297 C2H2 Transcription Factor Family AT1G08290 57.143 8.38e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g06374 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06374 - - tpra:123899635 535.028